PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51467.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 380aa    MW: 40689.1 Da    PI: 6.7477
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51467.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_167.13e-21293356164
                 XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
      bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                 e+elk++rrkq+NRe+ArrsR+RK+ae++eL++++++L+ eN  L++el++++ e+++l +e++
  Dca51467.1 293 ERELKKQRRKQSNRESARRSRLRKQAECDELAQRAEVLKDENANLRSELNRIRSEYDQLMAENH 356
                 89*********************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077777.8E-26195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.4E-37134261No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-17286353No hitNo description
SMARTSM003389.3E-22293357IPR004827Basic-leucine zipper domain
PfamPF001703.5E-19293355IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.013295358IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.0E-11296352No hitNo description
CDDcd147021.03E-23298349No hitNo description
PROSITE patternPS000360300315IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGGSETENAA KEPKVPPSSV APEQGSAMST GTVNAEWPGY QAYAHVPPPG FMASNPQAHP  60
YMWGVQHMMP PYGTPPHPYV AMYPHGGVYA HPSMPPGSYP FAPFAMPSPN GMAEASGNTH  120
GSADADNKQP EGKEKLPVKR MRGSLGSLNM LTGKSNKDGK SATTVTNGAC SKSTDSGSDG  180
SSEGSDENSQ NDSPRKSEGR QEVGEADMSQ NGNSNHVTQN GVVMPHTMVN HAMGVVPMTG  240
PATNLNIGMD YWGGPASAPV PAMQRKVSAP AAAGMVSAGS RDNLQSPLWL QDERELKKQR  300
RKQSNRESAR RSRLRKQAEC DELAQRAEVL KDENANLRSE LNRIRSEYDQ LMAENHALKE  360
RLGETPEDLG SSQPELSLAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309315RRSRLRK
2309316RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851857.10.0bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-146BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0K9RU140.0A0A0K9RU14_SPIOL; Uncharacterized protein
STRINGXP_010677384.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-133basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]