PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca51471.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 927aa MW: 105704 Da PI: 8.6576

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca51471.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.6	4.2e-13	70	189	1	91
FAR1 1 kfYneYAkevGFsvrkskskks..........krngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkek..... 72 +fY++YA +GF rks++k+ +rn+ ++++ vC++eg+r++++ + + r+++ tr+gC+ak++ k + Dca51471.1 70 QFYDTYAAACGFVPRKSSTKRFsarksstkrsDRNDFVKTKLIVCNREGFRDSKSAVlpdygedddtrvKPYNPRQTKITRIGCNAKIVFKCTFkmvdk 168 69****9999777776665555555665558889999999*******9988**99887766777899*******98876533322 PP FAR1 73 ..dgkwevtkleleHnHelap 91 ++v+++ + HnH l+p Dca51471.1 169 vtMPFYVVDQFYEAHNHLLCP 189 22456999********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-10	70	189	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.1E-31	310	403	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.608	592	628	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.8E-8	592	624	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.6E-5	603	630	IPR006564	Zinc finger, PMZ-type
Pfam	PF13456	6.3E-11	822	880	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
PFDSALSSAL PLDSASFSTP QCLEVDEVRG GNHLSLRLTP GGSEEWIRNV AKQFTPTIGQ 60 TFATLNECIQ FYDTYAAACG FVPRKSSTKR FSARKSSTKR SDRNDFVKTK LIVCNREGFR 120 DSKSAVLPDY GEDDDTRVKP YNPRQTKITR IGCNAKIVFK CTFKMVDKVT MPFYVVDQFY 180 EAHNHLLCPL KYREFQKKDR QLSLHQKQTI IDNCKVNIGP TTTFRSYKEY VDGYENIGAC 240 LTDFKNFGRE IKCFIGLQDA QMFINQFEVL FETKKGFYYG YDVDDRQCLF RVFWADAEAR 300 RNYSLYGEAV TFDPTYSTNR YNMIFCPFTG VDHHKKSVTF GAALISNESE QNFKWVFTKF 360 LDAMGGKEPH CFFTDQCPAM KIAVPAVFKT AAHRFCMWHI MQKLPEKVGT TITKETDFVT 420 RLSSIVWDSD IEPTDFEQKW SALIIEFELQ SNGWLTYMFS VRQHWIPAYY RDVPLGCLLR 480 TTQRSESVNS FFKRFENPRG TLVEFWLRFQ SAMDQQRYTQ KSLDRDSDYS LPQTKTLLSL 540 EIHASTVYTH EIFYEFQQQC VDSLHSCSAG DSSADSTMRF LDVEDSILHK TYTVAFSPTT 600 FEANCSCKMF ERKGYICKHI IWILSGKGVK KIPEKYLLSR WTKNSKKMPL YDVHGQLMDD 660 FDSSDVTKLH ISKLWSEFYS TLNLLRSMPQ NHVKELTDLL KSFRQKLKPI AKPMNKKQEL 720 EMLLGFKATT DINILPPVES KNKGSGKRLT SKRQQNIAKA QKPKRLCNNC KQMAHHDKRN 780 CPNAFANTVD QAMDNESEFV GRCGNGGISR FFRRGLRESG MGTGIGVVCR NEEGGVVWGV 840 TVQQREVVGP AMAEAVAVLT GLQEALASGA RSVMVESDCK SGGCCNKVAH GLAHALPWSI 900 GRQSWLGSNL PRNIAELVAL DVGMNES

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

PFDSALSSAL PLDSASFSTP QCLEVDEVRG GNHLSLRLTP GGSEEWIRNV AKQFTPTIGQ  60
TFATLNECIQ FYDTYAAACG FVPRKSSTKR FSARKSSTKR SDRNDFVKTK LIVCNREGFR  120
DSKSAVLPDY GEDDDTRVKP YNPRQTKITR IGCNAKIVFK CTFKMVDKVT MPFYVVDQFY  180
EAHNHLLCPL KYREFQKKDR QLSLHQKQTI IDNCKVNIGP TTTFRSYKEY VDGYENIGAC  240
LTDFKNFGRE IKCFIGLQDA QMFINQFEVL FETKKGFYYG YDVDDRQCLF RVFWADAEAR  300
RNYSLYGEAV TFDPTYSTNR YNMIFCPFTG VDHHKKSVTF GAALISNESE QNFKWVFTKF  360
LDAMGGKEPH CFFTDQCPAM KIAVPAVFKT AAHRFCMWHI MQKLPEKVGT TITKETDFVT  420
RLSSIVWDSD IEPTDFEQKW SALIIEFELQ SNGWLTYMFS VRQHWIPAYY RDVPLGCLLR  480
TTQRSESVNS FFKRFENPRG TLVEFWLRFQ SAMDQQRYTQ KSLDRDSDYS LPQTKTLLSL  540
EIHASTVYTH EIFYEFQQQC VDSLHSCSAG DSSADSTMRF LDVEDSILHK TYTVAFSPTT  600
FEANCSCKMF ERKGYICKHI IWILSGKGVK KIPEKYLLSR WTKNSKKMPL YDVHGQLMDD  660
FDSSDVTKLH ISKLWSEFYS TLNLLRSMPQ NHVKELTDLL KSFRQKLKPI AKPMNKKQEL  720
EMLLGFKATT DINILPPVES KNKGSGKRLT SKRQQNIAKA QKPKRLCNNC KQMAHHDKRN  780
CPNAFANTVD QAMDNESEFV GRCGNGGISR FFRRGLRESG MGTGIGVVCR NEEGGVVWGV  840
TVQQREVVGP AMAEAVAVLT GLQEALASGA RSVMVESDCK SGGCCNKVAH GLAHALPWSI  900
GRQSWLGSNL PRNIAELVAL DVGMNES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-86	FAR1-related sequence 5