PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca51488.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 356aa MW: 40807.6 Da PI: 8.5339

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca51488.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.3	1e-07	42	136	5	90
FAR1 5 eYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.......dgkwevtkle..leHnHela 90 e A++ GF ++k+++ ++ +r+ e + f+Cs++g+++ + ek +++ ++++++C+ +++ +++ w++ + + HnH+l+ Dca51488.1 42 EIAQDNGFVLVKANNGSKnRRQPELLASYFRCSRYGRSKGVYDP-EKPKKKPKTQKCDCRFRIRAVQNYhfvhnkrVVLWNIVTSDtfGCHNHALT 136 568999*99988765549999************9998887.777777777888888777654443344311133466666555567999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-5	42	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-25	251	346	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MSDAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NEIAQDNGFV LVKANNGSKN 60 RRQPELLASY FRCSRYGRSK GVYDPEKPKK KPKTQKCDCR FRIRAVQNYH FVHNKRVVLW 120 NIVTSDTFGC HNHALTKYKD GQRGYAGLDE DEKAFVRQQY SNAVLPRDIK TGLHLKSPDK 180 PQPSSKQIYN VTSKIRREVK GDRNPAQQML ALAVEANYVH WHETNPLTLE LTHVFMSHPE 240 AVKLFRAYPH VVLMDSTYKT NIYKMTLVEV VGVTPGGSSF LIACVLIPME SEEGYMWLLR 300 KLMEILECTG VSPSAFVTDR ELGLVGALRN LFPDTPHLFC RWHVNRAVEN RALLNF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MSDAESVDSF ENLGGDNVDY NHLFVTEVCF EDRDKAFDWA NEIAQDNGFV LVKANNGSKN  60
RRQPELLASY FRCSRYGRSK GVYDPEKPKK KPKTQKCDCR FRIRAVQNYH FVHNKRVVLW  120
NIVTSDTFGC HNHALTKYKD GQRGYAGLDE DEKAFVRQQY SNAVLPRDIK TGLHLKSPDK  180
PQPSSKQIYN VTSKIRREVK GDRNPAQQML ALAVEANYVH WHETNPLTLE LTHVFMSHPE  240
AVKLFRAYPH VVLMDSTYKT NIYKMTLVEV VGVTPGGSSF LIACVLIPME SEEGYMWLLR  300
KLMEILECTG VSPSAFVTDR ELGLVGALRN LFPDTPHLFC RWHVNRAVEN RALLNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	93	PKKKPKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-15	FAR1-related sequence 5