PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51541.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 226aa    MW: 25697.3 Da    PI: 4.9354
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51541.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.62.9e-105395754
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +ErrRR+++N+++ +Lr+ +P       + ++Ka+i + A+ YI +L
  Dca51541.1 53 DAERRRRAKLNDRLLQLRTSVPII-----TNMTKATIIKDAITYIEEL 95
                68*********************6.....58**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.24E-1543109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.95E-114499No hitNo description
PROSITE profilePS5088814.384695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-85195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1252101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-1453109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEGYYAYSDV DDSSLEDEGL ARMIKNKSGK RKRVVASEDN NNDDSRFKSK NLDAERRRRA  60
KLNDRLLQLR TSVPIITNMT KATIIKDAIT YIEELKRQVD ELNEELLELG DIQPKDDIKP  120
TIYNFNIQEM KNNGIQPEVK VINIDKNKIW VRVVFQNTMG GLTKLLEAIT ELGFEFNDTN  180
LITSKGAAVI NSCLQGVCGG SHDIEETKEM IMSVIRGMEM INMSTN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019106821.11e-66PREDICTED: transcription factor DYT1-like
RefseqXP_021866065.12e-66transcription factor DYT1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.14e-39bHLH family protein