PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca51545.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 787aa MW: 92078.1 Da PI: 7.4381

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca51545.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31.2	7.4e-10	81	174	2	82
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 Y+++++ vGFs+rks++++ n +t++ f Cs+egk++++k + k+r++ ++trt C+a l+vk+ +++ + +l+ Dca51545.1 81 LYKQHSRAVGFSIRKSTTRRIgGVNSLVTEKYFLCSCEGKAKSQKLIqtctddnslapgEIKKRKRVSSTRTCCQAFLRVKLLFNKRERERRLN 174 7**************9999778999**********99887789*****999999999************9887776655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-6	81	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-32	322	417	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.347	592	640	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.6E-4	611	636	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0054	615	642	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 787 aa Download sequence Send to blast
MNFDLNEFPL IDDEPEGVYD SIDELQLLQD DDEPGDYVEV ECGSEGDLQN STDNPLIPEG 60 FDISGSLVGI KSRSWRELYE LYKQHSRAVG FSIRKSTTRR IGGVNSLVTE KYFLCSCEGK 120 AKSQKLIQTC TDDNSLAPGE IKKRKRVSST RTCCQAFLRV KLLFNKRERE RRLNGQRRYE 180 LVPDVYEVVS HVVAHNHTLT SPRWQHHHRS ERQISEEEGA LIQVMTDARV PAAVQYRFLS 240 RSCGGDENVG HTQKDHFNFV NRLKMKAIEG GDAQTVIEML QKRQSEDPDF FFRFKLDSNC 300 RVTHLFWRDS MMKEDYLLYH DVLVFDTTYR TNKYNLICGA FVGINNHWSN VMFGCAFLSD 360 EKSESFEWLF ETFNESMGGD VFPISIFTDQ DQAMSNAIEK VYPMSKHRLC LWHIQQNAMS 420 HFGSLKHDST FRHVFNKCLR GCYNEQEFEV TWNKMIVDYN LQNDPWFIRL YAIQTKWCTA 480 LSKDFFSTGI LSSQRSESTN HAISFNASKT TSLTDFYAIF SETVKRWRRE EERNEFQCSR 540 STHASYFHMG GLLRHASEVY TLNLFREFEK EFGIAMSTQT EICSIESTVY VYKVFFESPT 600 DAAQFVSFDP VNVRIDCSCR YFQEAGLLCC HSIRVLHLHS ISTIPENYIS KRWTKYAKYE 660 VWKRYEESDT RCTQDKDLKS WRCSMLRKFH NLIMKCQDVK EARALLDEAY TRDLHQVSDL 720 LESLRQNSTD MHFNNPPKTN LLHTLLLFRR KCTNKVKKST RRTISLNFYP CPTKNHKETQ 780 LKATLHI

Sequence ? help Back to Top

Protein Sequence Length: 787 aa Download sequence Send to blast

MNFDLNEFPL IDDEPEGVYD SIDELQLLQD DDEPGDYVEV ECGSEGDLQN STDNPLIPEG  60
FDISGSLVGI KSRSWRELYE LYKQHSRAVG FSIRKSTTRR IGGVNSLVTE KYFLCSCEGK  120
AKSQKLIQTC TDDNSLAPGE IKKRKRVSST RTCCQAFLRV KLLFNKRERE RRLNGQRRYE  180
LVPDVYEVVS HVVAHNHTLT SPRWQHHHRS ERQISEEEGA LIQVMTDARV PAAVQYRFLS  240
RSCGGDENVG HTQKDHFNFV NRLKMKAIEG GDAQTVIEML QKRQSEDPDF FFRFKLDSNC  300
RVTHLFWRDS MMKEDYLLYH DVLVFDTTYR TNKYNLICGA FVGINNHWSN VMFGCAFLSD  360
EKSESFEWLF ETFNESMGGD VFPISIFTDQ DQAMSNAIEK VYPMSKHRLC LWHIQQNAMS  420
HFGSLKHDST FRHVFNKCLR GCYNEQEFEV TWNKMIVDYN LQNDPWFIRL YAIQTKWCTA  480
LSKDFFSTGI LSSQRSESTN HAISFNASKT TSLTDFYAIF SETVKRWRRE EERNEFQCSR  540
STHASYFHMG GLLRHASEVY TLNLFREFEK EFGIAMSTQT EICSIESTVY VYKVFFESPT  600
DAAQFVSFDP VNVRIDCSCR YFQEAGLLCC HSIRVLHLHS ISTIPENYIS KRWTKYAKYE  660
VWKRYEESDT RCTQDKDLKS WRCSMLRKFH NLIMKCQDVK EARALLDEAY TRDLHQVSDL  720
LESLRQNSTD MHFNNPPKTN LLHTLLLFRR KCTNKVKKST RRTISLNFYP CPTKNHKETQ  780
LKATLHI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010665808.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-74	FAR1-related sequence 5