PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51601.1
Common NameDcERF1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 271aa    MW: 30048.9 Da    PI: 6.3697
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51601.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20107156255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  Dca51601.1 107 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDTAAYKLRG 156
                 59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.77E-33106164No hitNo description
SMARTSM003801.5E-33107170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-31107164IPR001471AP2/ERF domain
PROSITE profilePS5103222.708107164IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23107164IPR016177DNA-binding domain
PRINTSPR003672.2E-11108119IPR001471AP2/ERF domain
PfamPF008475.5E-14108156IPR001471AP2/ERF domain
PRINTSPR003672.2E-11130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTTMDMLYGN NSNLNSFESG QFCQIYSEPF GNELMEALSP FIKPTPGPVT GPYLDGPHFF  60
GLTHPSPSQT LTQTQTQTQT QFQVPTFLGL EPVAVKPSGP PPKPAKLYRG VRQRHWGKWV  120
AEIRLPKNRT RLWLGTFDTA EEAALAYDTA AYKLRGDFAR LNFRRGEFGD YNPLHASVDA  180
KLETICENLA KQGSVAKGGK SKKNTVKKVE EKVVVKASES CSESDLRSGS GSPLSELTFD  240
DVEDEIGRES LMLESVPSHE IDWDAILKMS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20106163159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839741.16e-80ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E44e-63RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
SwissprotQ9LM152e-63RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLD4QD690.0D4QD69_DIACA; AP2/EREBP family transcription factor
STRINGXP_010676915.11e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-47ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Harada T,Torii Y,Morita S,Masumura T,Satoh S
    Differential expression of genes identified by suppression subtractive hybridization in petals of opening carnation flowers.
    J. Exp. Bot., 2010. 61(9): p. 2345-54
    [PMID:20308205]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  5. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  6. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  7. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]