PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5170.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C2H2

Protein Properties

Length: 440aa MW: 49229.1 Da PI: 9.9044

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5170.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.5e-05	209	231	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg++F ++nL+ H+ + H Dca5170.1 209 SCTHCGEVFMKPDNLELHLAVrH 231 8*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.6	208	236	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	208	231	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-18	233	438	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.2E-8	236	437	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence Send to blast
MAKNTSTKPT KEIHKTRKGK QQQQQQLPSW AVMRNILTCK HLEVEPPLQQ QQQQQQQPSP 60 QNKKHKQKTT TTTTTTTTTT TPPPPKSKKM RCSGSLCNNT KVMHRPEQQN QQQQQQQQSP 120 SPETRKVKNT PTSTPSSSSH EGSNRSFNTT PISSSLTTEI KGTNHNNSNN YSVKGMPFRR 180 LTGCYECRMI VDPVLSFTRD PSLRSTICSC THCGEVFMKP DNLELHLAVR HAVSELGPDD 240 TSKNIVEIIF QSSWLMKQIP VCKIDRILKV HNTQRTINKF EEYRDLIKFK ATNLPKKHPR 300 CIADGNELLR FYCTTFKCSL GLNGSSNLCN SIPHCNICSI IKNGFKSLGG PTHEKGILTT 360 ASSGRAHEQA KVGPDGVERR AMLVCRVIAG RVRKTPAEGP SEECDSMAGE TTGVYSNLDE 420 LYVFNPRAIL PCFVVIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence Send to blast

MAKNTSTKPT KEIHKTRKGK QQQQQQLPSW AVMRNILTCK HLEVEPPLQQ QQQQQQQPSP  60
QNKKHKQKTT TTTTTTTTTT TPPPPKSKKM RCSGSLCNNT KVMHRPEQQN QQQQQQQQSP  120
SPETRKVKNT PTSTPSSSSH EGSNRSFNTT PISSSLTTEI KGTNHNNSNN YSVKGMPFRR  180
LTGCYECRMI VDPVLSFTRD PSLRSTICSC THCGEVFMKP DNLELHLAVR HAVSELGPDD  240
TSKNIVEIIF QSSWLMKQIP VCKIDRILKV HNTQRTINKF EEYRDLIKFK ATNLPKKHPR  300
CIADGNELLR FYCTTFKCSL GLNGSSNLCN SIPHCNICSI IKNGFKSLGG PTHEKGILTT  360
ASSGRAHEQA KVGPDGVERR AMLVCRVIAG RVRKTPAEGP SEECDSMAGE TTGVYSNLDE  420
LYVFNPRAIL PCFVVIYGGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	66	PQNKKHKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692561.1	0.0	PREDICTED: uncharacterized protein LOC104905404
TrEMBL	A0A0K9QQH8	0.0	A0A0K9QQH8_SPIOL; Uncharacterized protein
STRING	XP_010692561.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	7e-95	C2H2-like zinc finger protein