PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51720.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 323aa    MW: 34960.4 Da    PI: 5.3653
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51720.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1537.4e-17156210461
                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                 +kr rr+++NRe+ArrsR+RK+a+++ Le  v++L +eN +L    ++l++  ++lk+
  Dca51720.1 156 VKRLRRMISNRESARRSRKRKQAQLKDLELQVEQLGGENVTLY---KQLTEATQQLKD 210
                 79*****************************************...777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.3E-16153217IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.231155218IPR004827Basic-leucine zipper domain
PfamPF001709.3E-14156209IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-12157207No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-13157209No hitNo description
CDDcd147021.21E-21158208No hitNo description
PROSITE patternPS000360160175IPR004827Basic-leucine zipper domain
PfamPF124983.0E-5224274IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKRSPSELAM ELQALINNNN NNNNNNDHSI SSSTAEIKPS SSSAVDAFFD HHRFDDPTAG  60
VDCSDLVFSF KNQDLINGLQ NCGGFDESPT SWYHNNLTPQ KPCISALDSQ SSICAESPTS  120
TLKPKVGDNQ GSGSSEDDDG ETEAGLCEQS DGNVDVKRLR RMISNRESAR RSRKRKQAQL  180
KDLELQVEQL GGENVTLYKQ LTEATQQLKD ASTNNRVLKS DVEALRAKVK LAEDMVTRGS  240
LSCGLNQLIQ TQLNLSHHML NTQNTSQVAH NVSPTTIVRG QEASFGTGFS GHNPGLGNHV  300
VQGSDMGGFG SDGTNCVPGI WPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175RRSRKRK
2169176RRSRKRKQ
3171176SRKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by glucose. {ECO:0000269|PubMed:18841482}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669483.11e-85PREDICTED: basic leucine zipper 9 isoform X2
SwissprotQ9FUD32e-57BZIP9_ARATH; Basic leucine zipper 9
TrEMBLA0A2N9J9Y93e-77A0A2N9J9Y9_FAGSY; Uncharacterized protein
TrEMBLA0A438C2304e-77A0A438C230_VITVI; Basic leucine zipper 9
STRINGXP_010669482.13e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.11e-59basic leucine zipper 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ortiz-Espín A, et al.
    Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
    J. Exp. Bot., 2017. 68(5): p. 1025-1038
    [PMID:28184497]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]