PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca51807.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 872aa    MW: 98874.9 Da    PI: 5.3066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca51807.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-12571351597
                 -EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  15 rlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++++p +fa+++  +    +sk  +++ ++g++W+v +   kk ++ ++ +GWk+Fv+   ++ g f++Fk++g+ +f   v+++
  Dca51807.1  57 NMRIPETFARAYyeE--LYTSKNAIFTVPTGEKWQVSI--LKKVDKLWFHQGWKGFVDNYSIDYGYFLLFKYEGNLRF--DVHIY 135
                 599*********654..447889***************..9*******************************997666..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.0E-454138IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-1557140IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1557139IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-957135IPR003340B3 DNA binding domain
CDDcd100172.35E-1258136No hitNo description
PROSITE profilePS5086311.26558138IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-11265344IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-10265344IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0023269364IPR003340B3 DNA binding domain
CDDcd100172.22E-10269344No hitNo description
PROSITE profilePS508639.968270370IPR003340B3 DNA binding domain
Gene3DG3DSA:2.130.10.801.2E-10443602IPR015916Galactose oxidase, beta-propeller
SuperFamilySSF1172815.36E-12444612No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    Send to blast
MRSLGDPSSV VSPGVYPTPP FLPVCLPIRR GGADPTSPLS SNLFRGDGAW GRGGVRNMRI  60
PETFARAYYE ELYTSKNAIF TVPTGEKWQV SILKKVDKLW FHQGWKGFVD NYSIDYGYFL  120
LFKYEGNLRF DVHIYDLTTC EISYEKERCH EDVGLEQEVS YRREINDSVS DSDNYSDDDS  180
DTDSDSDFEC LGSPSICPVI ELNDDDDDDH VSGEEDMKSN DERRSGHSSE TIDARQTTSA  240
TSIPAWFKPK EELMKAVTVA GIPIPKNPFF LTLIKSYNLY KTRYISVPTP FARLFIGSKD  300
NCFRFITLEV DDGRQWGVKC MISGRKSLFG RGWITFARDY GLEELERAVK LMSYLLRLAL  360
AFKEGVIAAK AMGVNKYQTV RDMGNPPTIF LFFDHDCPDM SYSAYSIELP SDISEQLVDS  420
DGFILDSKPI SPVFTLKEEN EFLAYCAALN FGSKVYFLGG RLDVPRGSSA DMERLFCQVR  480
VFDTHRPDQG LLSVAPMHAP KATPCVFVAD GFLYALGTTL RSFGKILPGF KGSGVFERYD  540
PISDQWQVLP DPPTPSAFWE DTSFLDKATV VGRRVVIGSW FMYLVFNLDS KKWDPVPPSE  600
IASRFPYGSL FVEDTNSLYQ LTSPYAEKSG VQFLGELNFE EPLTAVKRGP FATTKDSHLL  660
KDPCLDPGNE QVMAQGIDLD EDKRFTNFIY NPWRDLFHVG GRFFCYVVTS QLVDHDDLDH  720
YYEPYSRGVL IKFFEEVEAP TDKNDKHKTK FRPLASFCYK IKTKFPNPSL FVRSSVLGTV  780
PDSWINAPPQ KKRQESKPKN KKKVWGQSLV MEKERHDHKD ENSDGLKKRL AAREEEVTRL  840
AAELARKDEL LKVYEELLAK ASSGPVPLVN GH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A328DA531e-146A0A328DA53_9ASTE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-27B3 family protein