PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5194.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 232aa    MW: 26178.8 Da    PI: 5.0559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5194.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH201.2e-063987153
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
               rr+ ++erE+  R+++N+ f +L +ll  +    ++ + Ka+iL ++++ +++
  Dca5194.1 39 RRVLKSEREKLKREQLNEHFTKLGSLLELS----DPNNGKAAILNETIRLLRD 87
               79999**********************998....899***********99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.78E-73693No hitNo description
SuperFamilySSF474598.37E-1237103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.1443888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-738106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-53988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MVLDVSTDDC LVNEESDAPE DAVDVGSLPS KKKRGKVPRR VLKSEREKLK REQLNEHFTK  60
LGSLLELSDP NNGKAAILNE TIRLLRDMVT QIQCLRKENV TLLSETHYVT VETNELKDEN  120
SALEAQIKSM QNELEEKLAQ HKPDLNVTPP ECWQSETRPQ FLDNSLPQQP PVLGPLYVIP  180
INPDYETFKK ADTAAKPVPL SKPLPRYPTP ADSWPLHLLS QQPKPTTEST TL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685315.14e-95PREDICTED: transcription factor bHLH47
RefseqXP_010685316.14e-95PREDICTED: transcription factor bHLH47
TrEMBLA0A0K9RH892e-84A0A0K9RH89_SPIOL; Uncharacterized protein
STRINGXP_010685315.12e-94(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.39e-47bHLH family protein