PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52144.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 421aa    MW: 47149.4 Da    PI: 8.9905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52144.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.6e-12342387655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR +i +++ +L++l+P+     +k  +  ++L +Av+YIk+Lq
  Dca52144.1 342 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTTDMLDLAVDYIKDLQ 387
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.735336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16338400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-12340391No hitNo description
Gene3DG3DSA:4.10.280.105.6E-15341400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8342387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MDSDFQQQQY EHHFQDLQRQ FTQQKQQVNT LTRFRSAPSS YFASFLDADD TQGGATGGDV  60
SNVRAHFSAA RPLSPETENI FARFMSSMGE GSKSSSHKIS EMPETSPEVM VSVKQESDTL  120
QQKPPPRQQQ GNYGTIPQMM YQSASKPPLA NHHGSVLSSV GMNSTLHMKI GIGGSGLTRH  180
SSSPAGFFDN LIIDGYGVMK GLDNYSGGST GREQVNYSSG QPSTSGLVRQ SSEVEETKFS  240
NYQNNDNNYN TGLPMRSWND SIMSETFSSL DRANDGRKTF SEHISSDYQS GESRSRPPPL  300
AHHLSLPNTS AELSAMDKLL HLQDGVPLRM RAKRGFATHP RSIAERVRRT KISERMRKLQ  360
DLVPNMDKQT NTTDMLDLAV DYIKDLQQQV KEFENIQPAL QVNIPAIYKK IKTYHKLPHR  420
Y
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772031.11e-146transcription factor bHLH130-like
TrEMBLA0A173G4L31e-107A0A173G4L3_HYLUD; BHLH1-like protein
STRINGXP_010673593.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.19e-57bHLH family protein