PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52167.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family M-type_MADS
Protein Properties Length: 919aa    MW: 101832 Da    PI: 8.9476
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52167.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.61.1e-151150342
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                ien++ r vt+ kR +g+lKK +ELSvLC+++++ + +++
  Dca52167.1 11 IENDTARRVTYKKRVKGVLKKTQELSVLCGVDACAVFYGP 50
                9*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.0E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.367149IPR002100Transcription factor, MADS-box
CDDcd002661.97E-23283No hitNo description
PRINTSPR004042.5E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-19395IPR002100Transcription factor, MADS-box
PfamPF003191.2E-141151IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-82338IPR002100Transcription factor, MADS-box
SuperFamilySSF566723.26E-41435657No hitNo description
PfamPF077274.1E-92436679IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566723.26E-41682869No hitNo description
CDDcd092721.41E-67762899No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 919 aa     Download sequence    Send to blast
MARKKVKLNY IENDTARRVT YKKRVKGVLK KTQELSVLCG VDACAVFYGP YDQSPIVWPS  60
SEAEATRILM DFRRKPDIDQ TQRKFNQESF LRQTVTKSEE RLLRLQRRNR EMEMENVTSQ  120
LLGGMPIQQV HFGDLGDLIW VIEDKLRCVQ HRIRKLDGPD KQAAAATAAA NHGINHNLNV  180
NAPLGGDIAD VVNAMIGGNG SVPVEMQFNQ PQFQPNRRIQ SDEASPLYDM ARWQLDRGTT  240
FRKVVASARS QRSFYEDQFP FASTATPATV ATPTPPFPVF SDDPHLDDPS TLIPAASSLD  300
LDALPTTEAA AMPSTEVAAS STSSTTSSSA SGEDSSSSRA ASATPATVAG GPDSVVINPP  360
PPIMGRGQRI KLPSTRLRDH VLSTSTSPSP STSSPSPTPS SSTVTSGVEP TSFKQALRDD  420
NWCQAMSEEI SALEKNGTWD LTTLPPGKKA LGCRWVYKLK YKSDGSIERH KARLVVFGNR  480
QIEGIDYGET FAPVVKMVTI RAFLAVAAAK NWALHQMDVH NAFLHGDLHE EVYMKLPPGF  540
NNGHEGKVCR LRKSLYGLKQ APRCWFAKLA TALKDYGFTQ SYSDYSLFSY VRGDTRLHIL  600
IYVDDLVIAG TDDRAISDFK SYLGSCFHMK DLGPLKYFLG IEVARSRRGL FLSQRKYALD  660
IISEVGLLGA KPAAFPIEQN HRLALATGPV LADVEPYRRL IGRLVYLSVT RLDLAYVVHI  720
LSQFLQHPRQ EHYDAALRVV RYLKGRPGQG ILLRSDSTLT LQAWCDSDWA GCPLTRCSVT  780
GWFVSLGGSP VSWKTKKQPT VSRSSAEAEY RSMAAITCEL KWLTGLLLTL GVPVSSPVEL  840
FCDNQSALYI AHNPVFHERT KHIEIDCHFV RDAIRDALIR PVHVASHDQL ADCFTKALGQ  900
HRFDTLIHKL GILNLHAPT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415205.10.0PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X3
TrEMBLA0A443PJ170.0A0A443PJ17_9MAGN; Copia protein gag-int-pol protein
STRINGSolyc00g075040.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-28AGAMOUS-like 80