PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca52171.1

Common Name

DcAREBF1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bZIP

Protein Properties

Length: 412aa MW: 44632.7 Da PI: 9.4218

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca52171.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.8	1.4e-14	334	384	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe+++++L++eN++L+k+ e+ ++ Dca52171.1 334 RRQRRMIKNRESAARSRARKQAYTMELEQEIAKLKEENEELRKKQAEILEM 384 69****************************************987666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.1E-14	323	393	No hit	No description
SMART	SM00338	4.4E-13	330	395	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.542	332	381	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.38E-11	334	382	No hit	No description
Pfam	PF00170	8.4E-13	334	384	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.26E-29	334	388	No hit	No description
PROSITE pattern	PS00036	0	337	352	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MGSNINFSNY GNEPPGNGDR GGSENFPLVR QSSIYSLTFD EFQNTLGGAG KDFGSMNMDE 60 LLKSIWNAEE TQSMATATAT APGAGNSGQD GGNNSGGYLQ RQGSLTIPRT LSLRKVDEVW 120 KDIAKDFNGG GGGSNVPQQQ QTLGEMTLEE FLMRAGVVKE DTQLGGSGIF GDLAPSRNNG 180 DMGFGINFQQ PNRGVDLMGN HMMPTNLPLN VNGARTSQQQ STQIQPLQPQ PLQPQPQQRQ 240 QPLYPKQPAV SYGIRGGVVG LGDPGINNVL MPNSAFQGGG GMIVPSGSPA TLSSDGLAKS 300 NGDTSSVSPV PYAAYNGGFR GRKPDNTVSK VVERRQRRMI KNRESAARSR ARKQAYTMEL 360 EQEIAKLKEE NEELRKKQAE ILEMQKNQAA EMMNEQSEGP RKRLRRTQTG MW

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MGSNINFSNY GNEPPGNGDR GGSENFPLVR QSSIYSLTFD EFQNTLGGAG KDFGSMNMDE  60
LLKSIWNAEE TQSMATATAT APGAGNSGQD GGNNSGGYLQ RQGSLTIPRT LSLRKVDEVW  120
KDIAKDFNGG GGGSNVPQQQ QTLGEMTLEE FLMRAGVVKE DTQLGGSGIF GDLAPSRNNG  180
DMGFGINFQQ PNRGVDLMGN HMMPTNLPLN VNGARTSQQQ STQIQPLQPQ PLQPQPQQRQ  240
QPLYPKQPAV SYGIRGGVVG LGDPGINNVL MPNSAFQGGG GMIVPSGSPA TLSSDGLAKS  300
NGDTSSVSPV PYAAYNGGFR GRKPDNTVSK VVERRQRRMI KNRESAARSR ARKQAYTMEL  360
EQEIAKLKEE NEELRKKQAE ILEMQKNQAA EMMNEQSEGP RKRLRRTQTG MW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716588.1	1e-164	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-116	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	N0DR69	0.0	N0DR69_DIACA; ABA responsive element binding factor
STRING	XP_010685236.1	1e-155	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-100	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]