PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5230.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 209aa    MW: 23210.7 Da    PI: 10.1954
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5230.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.67.1e-113179254
               HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               +r h+e+Er+RR+riN  +++Lr ll + +      K +Ka++L+++v+ +++L
  Dca5230.1 31 CRIHKEAERQRRERINAHIATLRALLLPnL-----NKTDKASVLKEVVRQVREL 79
               567***********************9955.....8***********9988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.10E-92982No hitNo description
PROSITE profilePS5088814.6152979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-123089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-83279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-113390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-83585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.3E-4116166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MMYGASNNFA PFMRHSSKPG LSPEAKAQEA CRIHKEAERQ RRERINAHIA TLRALLLPNL  60
NKTDKASVLK EVVRQVRELK KATSQLTADQ TDVDGFLLPG DVDEIKLRRH ENDNTTFIAS  120
FCCEDRPELI MDLNTALRTV QGKLVKAEMS TIGGRTKTVL WVRSDPGGGG SGGGPEASLK  180
KALRVVVDRP CSSSRMGYGL MYGRMHRPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021841028.12e-75transcription factor bHLH30-like
TrEMBLA0A0K9RIG14e-74A0A0K9RIG1_SPIOL; Uncharacterized protein
STRINGXP_010680330.12e-72(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.16e-33bHLH family protein