PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5233.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 644aa    MW: 72470.5 Da    PI: 8.6273
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5233.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.6e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+ien + rqvtfskRr g++KKAeELS+LCda+va+i+fss+gkl+ yss
  Dca5233.1  9 KKIENATARQVTFSKRRRGLFKKAEELSILCDADVALILFSSSGKLFHYSS 59
               68***********************************************96 PP
2K-box46.71.4e-16591203495
      K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                + Rh+ Ge+L+ Ls++eLq+Le+ Le++l+++ +kK e ++++i+ lq+k +e+ +++++  
  Dca5233.1  59 SSRHMRGEELHGLSIEELQELEKTLESGLTQVIEKKGEKIRSEISVLQQKVREAYKNKNQAA 120
                67**************************************************9988887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.4E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.763161IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-25323IPR002100Transcription factor, MADS-box
CDDcd002655.67E-33360No hitNo description
SuperFamilySSF554555.62E-26363IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.09739126IPR002487Transcription factor, K-box
PfamPF014868.8E-1259117IPR002487Transcription factor, K-box
PfamPF102503.9E-63231581IPR019378GDP-fucose protein O-fucosyltransferase
CDDcd112991.03E-145231585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MVKEKMEIKK IENATARQVT FSKRRRGLFK KAEELSILCD ADVALILFSS SGKLFHYSSS  60
RHMRGEELHG LSIEELQELE KTLESGLTQV IEKKGEKIRS EISVLQQKVR EAYKNKNQAA  120
PEFENVIYED GQSSESATTT SGCTSSAPSQ VFEDSSDTSL KLGASSQSSS AVLSEWVFAK  180
PRHSNLLKDA LRGQTPNEEP SELWSPLPDQ GWRPCGECSG SSGKPENSTG YLQVFLDGGL  240
NQQRMGICDA VAVAKILNAT LVIPLLEVNP VWQDDSSFEE IFDVDHFIDV LKDDISIVKE  300
LPYEYSWSTR EFYATAIRET RVKTAPVHAS DHWYIGNVLP VLQNYGIAAI SPFSHRLAFD  360
NMPVDIQRLR CKVNFQALTF VPHIRALGNA LVSRLRYPSS RSDPELGLIR DFTYRKAFRV  420
PQKFVVLHLR FDKDMAAHSA CDFGGGKAEK MALAKYRQAV WQGRVLNSQF TDEELRSQGR  480
CPMTPEEVGL LLAALGFDNS TRLYLASHKV YGGRARLSTL RKLFPLMEDK KSLATSEERA  540
RIKGKASLLA AVDYYVSMHS NIFVSASPGN MHNALVGHRT YESLKTVRPN MGLLGQLFLN  600
KNMSWTDFRQ EVVEGHQHRH GQLRMRKPKQ SIYTYPAPDC MCRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A5e-15360259Myocyte-specific enhancer factor 2A
3mu6_B5e-15360259Myocyte-specific enhancer factor 2A
3mu6_C5e-15360259Myocyte-specific enhancer factor 2A
3mu6_D5e-15360259Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680342.10.0PREDICTED: uncharacterized protein At1g04910
SwissprotQ0WUZ50.0OFT39_ARATH; O-fucosyltransferase 39
TrEMBLA0A0K9QTQ60.0A0A0K9QTQ6_SPIOL; Uncharacterized protein
STRINGXP_010680342.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-36MIKC_MADS family protein
Publications ? help Back to Top
  1. Hansen SF,Harholt J,Oikawa A,Scheller HV
    Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families.
    Front Plant Sci, 2012. 3: p. 59
    [PMID:22629278]
  2. Neumetzler L, et al.
    The FRIABLE1 gene product affects cell adhesion in Arabidopsis.
    PLoS ONE, 2012. 7(8): p. e42914
    [PMID:22916179]
  3. Wang Y,Mortimer JC,Davis J,Dupree P,Keegstra K
    Identification of an additional protein involved in mannan biosynthesis.
    Plant J., 2013. 73(1): p. 105-17
    [PMID:22966747]
  4. Voxeur A,André A,Breton C,Lerouge P
    Identification of putative rhamnogalacturonan-II specific glycosyltransferases in Arabidopsis using a combination of bioinformatics approaches.
    PLoS ONE, 2012. 7(12): p. e51129
    [PMID:23272088]