PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52337.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NAC
Protein Properties Length: 331aa    MW: 38056.2 Da    PI: 5.2945
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52337.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-5261321128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lppGfrFhPtdee+v +yLk+kve+ ++el e+i+e++ yk++Pw+Lp k  + +++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v +  +
  Dca52337.1   6 LPPGFRFHPTDEEIVGYYLKRKVEKLEIEL-EIIPEIEFYKFDPWELPdKsFLPKRDMEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVAC--E 101
                 79****************************.99**************96434556788************************************99..7 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 +++g +ktLvfy+grap g++tdWvmheyrl
  Dca52337.1 102 TVTGFRKTLVFYQGRAPLGNRTDWVMHEYRL 132
                 89***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-554151IPR003441NAC domain
PROSITE profilePS5100557.0646151IPR003441NAC domain
PfamPF023652.3E-297132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGGATLPPGF RFHPTDEEIV GYYLKRKVEK LEIELEIIPE IEFYKFDPWE LPDKSFLPKR  60
DMEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVAC ETVTGFRKTL VFYQGRAPLG  120
NRTDWVMHEY RLSDDTQNVY GAFALCRVVK RNGFNEGVKA KRVGSHSGNK DSVPSEVSNE  180
PLSISSDYQY NSSNYSSPIS SPYITPRAEI EATTSVNTIS SNMWVSPELI LDSSKEYSQG  240
KKMPYDYNPR WEIEDSATQW QPCQQQQQGI SPSTSYSNFG EIERFDNLNQ IGCLSPYSAN  300
MDYMGFYENV GTFYESYDGN NTLNYQNPSS F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-49515216166NO APICAL MERISTEM PROTEIN
1ut4_B5e-49515216166NO APICAL MERISTEM PROTEIN
1ut7_A5e-49515216166NO APICAL MERISTEM PROTEIN
1ut7_B5e-49515216166NO APICAL MERISTEM PROTEIN
4dul_A5e-49515216166NAC domain-containing protein 19
4dul_B5e-49515216166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00546DAPTransfer from AT5G46590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021768141.11e-173NAC domain-containing protein 71-like
SwissprotQ9LS245e-92NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A088FL450.0A0A088FL45_9CARY; Putative NAC transcription factor
STRINGXP_010677286.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-77NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]