PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52360.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 223aa    MW: 26300.3 Da    PI: 5.558
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52360.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-184296256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++++f+++q++ Le+ Fe++ ++  +++ + A++lgL+ rqV +WFqN+Ra++k
  Dca52360.1 42 NNKRRFSDQQVRSLETIFESETKLEPRKKVQVARELGLQPRQVAIWFQNKRARWK 96
                56789*************************************************9 PP
2HD-ZIP_I/II115.53.2e-3743134293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +krr+s++qv++LE+ Fe+e+kLep++Kv++areLglqprqva+WFqn+RAR+k+k++Ek+y++Lk++yd lk++ e+++k++e+L ++l+e
   Dca52360.1  43 NKRRFSDQQVRSLETIFESETKLEPRKKVQVARELGLQPRQVAIWFQNKRARWKSKEIEKNYRVLKSNYDCLKARLEAVRKDKESLLTQLQE 134
                  79*************************************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-182199IPR009057Homeodomain-like
SuperFamilySSF466891.71E-172899IPR009057Homeodomain-like
PROSITE profilePS5007117.5723898IPR001356Homeobox domain
SMARTSM003891.2E-1540102IPR001356Homeobox domain
PfamPF000462.2E-154296IPR001356Homeobox domain
CDDcd000864.53E-124799No hitNo description
PRINTSPR000312.5E-56978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000312.5E-57894IPR000047Helix-turn-helix motif
PfamPF021837.9E-1198139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MMMQEGRDFS HEADDVLEPL SPENDEEQQQ PPTTKKRKSN KNNKRRFSDQ QVRSLETIFE  60
SETKLEPRKK VQVARELGLQ PRQVAIWFQN KRARWKSKEI EKNYRVLKSN YDCLKARLEA  120
VRKDKESLLT QLQELRSVLE RSRDSTEDMA KSSRVQQEDM ERQGLLVYSD DDRSGNMEYL  180
KQEEAELMNV EGSIVSPVKW CSFDAGSLFD QSSTSSHWWE SWT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858019.12e-91homeobox-leucine zipper protein ATHB-12-like
SwissprotP468974e-46ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBLA0A0K9QS262e-90A0A0K9QS26_SPIOL; Uncharacterized protein
STRINGXP_010666163.17e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.12e-43homeobox 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou SF, et al.
    Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis.
    New Phytol., 2015. 208(1): p. 188-97
    [PMID:25919792]