PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52376.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 241aa    MW: 27888.5 Da    PI: 9.8711
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52376.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.52.5e-0965157790
        FAR1   7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle......leHnHela 90 
                 A e GF ++k+++ ++ +++ e   + f+Cs++g++++  +  +k +++  +++++C+ +++  +++   d+kw+v           +HnHel+
  Dca52376.1  65 AFENGFALVKATNGQKnRKQPELSASYFRCSRHGRSKTVYDP-DKPKKKPRTQKCDCEFRVRAVQNYhsiDNKWVVLWNIvvskgfGNHNHELT 157
                 7789***999887655388899**************999888.677777778889999988866665689999988543335566689****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-665157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVESRPVPEM AIAITTAAVT VVVVEFRQDS FEDFRGDDVD YNPLFVTKLS FKDRDEAFVW  60
ANNVAFENGF ALVKATNGQK NRKQPELSAS YFRCSRHGRS KTVYDPDKPK KKPRTQKCDC  120
EFRVRAVQNY HSIDNKWVVL WNIVVSKGFG NHNHELTKYK DGHRHYAGLD EEEKAYIKRQ  180
YSTSAFPRDI KTGLHQKTPT KPQPSSKQIY NETSKLRREL KGERNPAQQM LALTVESNYV  240
H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107113KPKKKPR
2108114PKKKPRT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-