PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52384.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MIKC_MADS
Protein Properties Length: 224aa    MW: 25838.4 Da    PI: 8.4351
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52384.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.3e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                +ien +nrqvtfskRr+g+lKKA EL +LCda++ +iifs+t+kly++++
  Dca52384.1 10 KIENRTNRQVTFSKRRQGLLKKATELAILCDAQIGLIIFSTTNKLYTFPN 59
                69**********************************************95 PP
2K-box64.63.7e-22881701294
       K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                  ++e+++q+++ Lk+ i   +++ Rh+l ed+++L l++L++ eqqLe+sl+ iR++Kn+l+ +q+e+l++ke++lq +n ++
  Dca52384.1  88 DNQEEMYQQVEGLKEAIGVAEQSMRHYLAEDIGPLPLQDLHKHEQQLESSLNLIRARKNQLMQQQLENLRRKEQMLQVDNGNM 170
                 57899************************************************************************999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.642161IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.54E-29287IPR002100Transcription factor, MADS-box
CDDcd002652.24E-37284No hitNo description
PRINTSPR004041.3E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.4E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2187173IPR002487Transcription factor, K-box
PROSITE profilePS5129713.79990181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGRGKIEMRK IENRTNRQVT FSKRRQGLLK KATELAILCD AQIGLIIFST TNKLYTFPNN  60
NSGFIDQSLD HIVQKYLNAK GIQLPIHDNQ EEMYQQVEGL KEAIGVAEQS MRHYLAEDIG  120
PLPLQDLHKH EQQLESSLNL IRARKNQLMQ QQLENLRRKE QMLQVDNGNM YRWLMGTGQE  180
QLELPFFGVD EPSSSTVLQL ATSSSSPQLY PFRLQPTHPN LQTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-18176169MEF2C
5f28_B8e-18176169MEF2C
5f28_C8e-18176169MEF2C
5f28_D8e-18176169MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671447.11e-116PREDICTED: MADS-box protein FBP24 isoform X1
TrEMBLA0A1U8Q3Y54e-63A0A1U8Q3Y5_NELNU; MADS-box protein AeAP3-2-like
STRINGXP_010671447.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.21e-53MIKC_MADS family protein