PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52455.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 447aa    MW: 48847.8 Da    PI: 6.1128
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52455.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.3e-30195253259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK+ kg+++pr+YYrCt+   Cpv+k+v+r+aed +++++tYeg+Hnh+
  Dca52455.1 195 SDGCQWRKYGQKMAKGNPCPRGYYRCTMGtACPVRKQVQRCAEDRTILVTTYEGQHNHP 253
                 7***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-33179255IPR003657WRKY domain
SuperFamilySSF1182902.75E-27187255IPR003657WRKY domain
PROSITE profilePS5081129.402189255IPR003657WRKY domain
SMARTSM007743.6E-35194254IPR003657WRKY domain
PfamPF031066.8E-26196253IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MENNLRSHSS SPSNFSGFRQ VDDHEYHTQV VKEMDFFPSS RSQGRSKEHA TIMLDDDDED  60
DIIGHNNDLK LQIDTGLKLQ LTRSNKGFDE KSTVDDGVSL ELHDDNHTTK NEMGNDDERR  120
KEQQQHMRQY VGVGQTSMSN EGGEKGTNVR NKEQIMVSTN DLQTQSRESE QATHEVTMRR  180
ARVSVRARSE AAMISDGCQW RKYGQKMAKG NPCPRGYYRC TMGTACPVRK QVQRCAEDRT  240
ILVTTYEGQH NHPLPTAAVA MATTTSAAAS MLVAGSMSSP MDGLFNQPVF SQPTALPGLP  300
SLATISASAP FPTVTLDLTK PQSQPQPQHV NKTTSTPHTN SNGLILLGQM QQFLGHAIYG  360
QALGEANKDN NNNYKSPLDP INVAKAALAT DPTLAAALAT AISSAIQGNV QFPNSNTADA  420
NNNGNESTSQ GNNNNDNDLI LSHFVDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20185255877Probable WRKY transcription factor 4
2lex_A2e-20185255877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852733.11e-107WRKY transcription factor 42-like isoform X2
SwissprotQ9XEC33e-77WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A0J8B8E84e-96A0A0J8B8E8_BETVU; Uncharacterized protein
STRINGXP_010666198.15e-94(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-54WRKY family protein