PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5248.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 775aa    MW: 85144 Da    PI: 6.51
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5248.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.83.4e-0832109488
       FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                +++A + GF v+++ksk++         ++ C + g+++++++ + k++r+ +++ ++C  ++  kk+ d++w+++  + eHnHe
  Dca5248.1  32 RDFAVKHGFMVTIKKSKRE------SYFDLGCDRGGTTRRRTTGEPKRKRKVPSKLINCPFHVIGKKD-DDVWVLQIKNVEHNHE 109
                5799**********99888......5688*************99888999999999****99877777.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-632109IPR004330FAR1 DNA binding domain
SuperFamilySSF537201.44E-62182527IPR016161Aldehyde/histidinol dehydrogenase
Gene3DG3DSA:3.40.605.103.3E-54215396IPR016162Aldehyde dehydrogenase N-terminal domain
PfamPF001711.5E-55216461IPR015590Aldehyde dehydrogenase domain
Gene3DG3DSA:3.40.309.101.4E-16397461IPR016163Aldehyde dehydrogenase, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0016620Molecular Functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
Sequence ? help Back to Top
Protein Sequence    Length: 775 aa     Download sequence    Send to blast
MDSETNNVRK IARLPPPPGT FNDREEVIAY VRDFAVKHGF MVTIKKSKRE SYFDLGCDRG  60
GTTRRRTTGE PKRKRKVPSK LINCPFHVIG KKDDDVWVLQ IKNVEHNHEP LEDMSEHPYN  120
RRFSEDEVRQ IKEMIDAGIK PREVLETLKR SNPELKSTPK QLYNLKNKIT QGKFSETNFK  180
TWKPTNKISL QKVSNFIGGK FVNSEGNVCA DVVNPDKLAS VISTEQGETI KRAHASIIRG  240
LEVVEKACWN RSLQIGELVP NASTGVDMYS IREPLGVCAG ICQCNYPAVA PLWMFPISII  300
CGNTFVLNPS VKSPGASLKL VELAKEAGLP DGVLNVIHGG NDIVDHICGD DDIKAISFTG  360
SYTTASHIYA QAAARGKLVE ASIRCKNQAV VMPDACMDTT LDALIAAGFG AAGDPCISVR  420
SVIFVGSAAP WVEELVKRAK ELRVYEGADE SADIGPVISE EVPVYEMGSF VGPTILSGVT  480
PSMEWFEVGI NVPVSISLPF CSSGLTTYGK TGVDFYTQVK SVAQRWKGLT TNRISTTETV  540
TSEENLTHQT DPMPMHLPSD FTSHEAPSSM SETPDIEMTN QERQVNRPPC DHPDIDINLS  600
QTSKGAEDQP RQTTQGRERD GVPALDRYIP LLAEHNCMST AISFRTDVSS PLDNRNLPSV  660
PNHSSQTNDT FPPLTMQQVS MTSSSHRDEA VGSLHGSLGL GGFAHHFSSG REFVPTVHQP  720
HWNGNMVSSL THNGSCEGNA PNGAYIQRPS GRVESMFETQ GPDTFPRTFG ETSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zz7_A2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_B2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_C2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_D2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_E2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_F2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_G2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_H2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_I2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_J2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_K2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
4zz7_L2e-6315252627484Methylmalonate-semialdehyde dehydrogenase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076PKRKRKV
2145150ETLKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838775.10.0methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial-like isoform X2
TrEMBLA0A0K9R1F90.0A0A0K9R1F9_SPIOL; Uncharacterized protein
STRINGXP_009364800.10.0(Pyrus x bretschneideri)