PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52557.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 279aa    MW: 31778.5 Da    PI: 9.849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52557.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-1383134155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +rr+h ++Er+RR+++N+ ++ Lr+l+P++   +s + + a+++  A++++k+L+
  Dca52557.1  83 QRRTHIAVERNRRKQMNEHLAVLRSLMPES---YSLRGDQASVVGGAIDFVKELE 134
                 79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.29E-1281138No hitNo description
Gene3DG3DSA:4.10.280.101.0E-1381138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1182133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1582151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.8E-1183134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-988139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVFETMLNYN DIFNYMVCDT LNNAAAYYHG CSNTDVFDVG SLPLLQQGQF PSKGGVCVGV  60
QGKKKKRRRR PKVCKNKEEA ESQRRTHIAV ERNRRKQMNE HLAVLRSLMP ESYSLRGDQA  120
SVVGGAIDFV KELEHLVHSL EAQKLLVLQR EEVIRVGIHD AHTTPLNPDV FLNPQHLVTE  180
HCNKYTLKSR TEVAEVEVTL IETHANLRIL SKKNPRQLSK LISGFQSLRL TILHLNVTSL  240
DPFVLYSISI KRNSANMWTF PSFIRSGMPR EFSANFNSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267KKKKRR
26368KKKRRR
36369KKKRRRR
46469KKRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852436.18e-91transcription factor bHLH71-like
SwissprotQ9C7T41e-54BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0K9R2H78e-89A0A0K9R2H7_SPIOL; Uncharacterized protein
STRINGXP_010695562.19e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]