PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52568.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 359aa    MW: 40553.8 Da    PI: 4.8003
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52568.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.5e-35441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed++++ ++sws+  nsf+v+d+++f++ +Lp+ Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F  g+k+ll++ik
    Dca52568.1  44 FLTKTFDMVEDPSTDAIVSWSKARNSFIVWDSHKFSTLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLGGQKHLLKTIK 131
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+++
    Dca52568.1 132 RRRN 135
                   *987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.0E-5840133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.8E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3340133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEAVIVKVED LVGSSSSSSS SSSSKLTLSP KPMEGLNELN TPPFLTKTFD MVEDPSTDAI  60
VSWSKARNSF IVWDSHKFST LLLPRLFKHN NFSSFVRQLN TYGFRKVDPD RWEFANEGFL  120
GGQKHLLKTI KRRRNVTQSS QHQGGSCVEL GQYGLDGEID RLKRDRTLLM TEIVKLRQQQ  180
QSSRQQLVAM ESRLRSTEEK QQQMMTFLAK AFVNPTFVQN LMHKKDEHLK SVKAIKAGMK  240
RRLTSTLSAE KLEDVVAPEL DRLMAVESDI ETLLSATLDN GTDGDIKEQK VDDSMPPEID  300
TNVGDVSQTS WEELLWAEDE EGFRQDLDVP VENVVPESGN WGEDVEDLIE QLGFLGPMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-264013316120Heat shock factor protein 1
5d5u_B5e-264013325129Heat shock factor protein 1
5d5v_B5e-264013325129Heat shock factor protein 1
5d5v_D5e-264013325129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKTIKRR
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019103165.11e-155PREDICTED: heat shock factor protein HSF30 isoform X1
RefseqXP_019103167.11e-155PREDICTED: heat shock factor protein HSF30 isoform X1
SwissprotP411521e-121HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0K9S2581e-145A0A0K9S258_SPIOL; Uncharacterized protein
TrEMBLA0A0K9S3H81e-145A0A0K9S3H8_SPIOL; Uncharacterized protein
STRINGXP_010669379.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-110heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]