PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52722.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 451aa    MW: 50214.8 Da    PI: 6.388
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52722.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.5e-103824191954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Dca52722.1 382 FEHflHPYPNDSEKLTLASQTGLSKNQVSNWFINARVR 419
                 664459******************************88 PP
2BELL96.42.5e-31242312272
        BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                 +++lq+k +kL+slle+V+ rY  y+++++ +issFe+vag g+ak Yt lAl+a+ rhF +L+dai  qi
  Dca52722.1 242 KHDLQIKLSKLISLLEQVEGRYDEYCHKMEDLISSFEVVAGEGAAKCYTCLALQAMCRHFCSLRDAILTQI 312
                 789******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-24179310IPR006563POX domain
PfamPF075263.1E-32185308IPR006563POX domain
PROSITE profilePS5007112.017360423IPR001356Homeobox domain
CDDcd000862.42E-12363424No hitNo description
SMARTSM003897.0E-10363427IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-27368429IPR009057Homeodomain-like
SuperFamilySSF466892.1E-17369431IPR009057Homeodomain-like
PfamPF059203.1E-17380419IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MVSQDSHNNS NNNNNNNNNH HPTSSSSSSS NLHHFLVSSQ IPPQNHFGNP HFNPDPYSDH  60
SLDTAYFSSS VQSLGERMSR SINLVHDPSS MVSADDNSEL GHTTRHFMDL LGAAHEPTHG  120
SSRLSLSLGS QVLQPPDSMH YRERNLGSEF LHQAYNNFVA SSVGENCNPG DYSFMGSSSF  180
PAFSVSNSVY LKPAQSILEE VIDLGSKRVE VSEVKRLFLS SRGICNELRT ELMSNGLLSS  240
DKHDLQIKLS KLISLLEQVE GRYDEYCHKM EDLISSFEVV AGEGAAKCYT CLALQAMCRH  300
FCSLRDAILT QIKSVRKKIS PDLPNLGNGL SNLSFLGQEG RNNNGRLTLQ QIGLIQGTHR  360
QAWRPIRGLP ETSVAILRAW LFEHFLHPYP NDSEKLTLAS QTGLSKNQVS NWFINARVRL  420
WKPMIEEMYK EEFGDSSVDS SGDGATDRVE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17369426158Homeobox protein Meis1
4xrs_B9e-17369426158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010672774.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-98BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A0K9QNJ90.0A0A0K9QNJ9_SPIOL; Uncharacterized protein
STRINGXP_010672774.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-85BEL1-like homeodomain 11