PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca52726.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 347aa MW: 39608.2 Da PI: 7.5243

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca52726.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.3	5.7e-09	73	164	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF+v ++++ + + C gk+e++ + + ++ +++++ tgCka ++ e ++ +++++++leHnHe+ Dca52726.1 73 FTYAMKKGFEVFTRSNVID---PKYKAVGVSCEFGGKKEPRYHMmgrlrlackKGGRKCSENSNVTGCKAVFEAVVE-NEGFVIKSVHLEHNHEFD 164 58*******99987766...66779999******99999999766777799999*****9999.999**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-7	73	164	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MMVFYEEIEG NEIEVHNNGR SIESVENPIE ESPNLVQQAV NTFEGENLNN VGIVEPIVGM 60 IFPNCESFAA FIFTYAMKKG FEVFTRSNVI DPKYKAVGVS CEFGGKKEPR YHMMGRLRLA 120 CKKGGRKCSE NSNVTGCKAV FEAVVENEGF VIKSVHLEHN HEFDPANSHF TFSARIISDY 180 FKKRILLNDR AGIPITKNFN AMVLEAGGHE NLPFNRHDLR NFVNLERRLE RINGDVAALE 240 EYFVKMKTDS PDFFYAIKKD NEGRLQNVFW ADARCRTMFK VFGGVVTYDT TFFCNRYRLP 300 FSRFIWVNHH GNSICFVAAL TTNLDEKRIS VSATKDPTKL PLMGVFP

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MMVFYEEIEG NEIEVHNNGR SIESVENPIE ESPNLVQQAV NTFEGENLNN VGIVEPIVGM  60
IFPNCESFAA FIFTYAMKKG FEVFTRSNVI DPKYKAVGVS CEFGGKKEPR YHMMGRLRLA  120
CKKGGRKCSE NSNVTGCKAV FEAVVENEGF VIKSVHLEHN HEFDPANSHF TFSARIISDY  180
FKKRILLNDR AGIPITKNFN AMVLEAGGHE NLPFNRHDLR NFVNLERRLE RINGDVAALE  240
EYFVKMKTDS PDFFYAIKKD NEGRLQNVFW ADARCRTMFK VFGGVVTYDT TFFCNRYRLP  300
FSRFIWVNHH GNSICFVAAL TTNLDEKRIS VSATKDPTKL PLMGVFP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-33	FAR1-related sequence 5