PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52751.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-YA
Protein Properties Length: 241aa    MW: 26953.4 Da    PI: 9.5186
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52751.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.28.6e-31154210158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 dep+YVN KQy++Il+RR++Rakl +++kl +k+rkpylheSRh+hA++R RgsgGrF
  Dca52751.1 154 DEPIYVNVKQYNGILRRRHSRAKLHAQNKL-IKARKPYLHESRHRHAVNRVRGSGGRF 210
                 79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-32152213IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.358153213IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.7E-27155210IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-21156178IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.4E-21187210IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVSFGLPIFQ PILVEKNFIS QSRNSASLLS QNLSLRVDSP TQVCFNATPF GFQLIDHDSS  60
SSQSSQSNNH DLIATPGINS HDQCHEISEG DIIGQIKPIY STSHITADID YSPTMTFMPY  120
SCGDLYFNGL LSAYAPIMGI TTTRVPLPLD ILQDEPIYVN VKQYNGILRR RHSRAKLHAQ  180
NKLIKARKPY LHESRHRHAV NRVRGSGGRF LSTKKPPQSD TTSTDHHSNN ARKLSISNAF  240
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20154215263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021750059.13e-79nuclear transcription factor Y subunit A-7-like isoform X2
TrEMBLA0A0K9RF323e-77A0A0K9RF32_SPIOL; Uncharacterized protein
STRINGXP_010666451.12e-71(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.43e-39nuclear factor Y, subunit A8