PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca52773.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 385aa MW: 44084.4 Da PI: 6.0884

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca52773.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178	2.6e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL++k+++++++l ++ikevd+yk+ePwdL + k+ +++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k Dca52773.1 7 VPPGFRFHPTDEELVDYYLRRKINSRRIDL-DIIKEVDLYKIEPWDLLEicKLGDeDQSEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-K 103 69**************************.99**********743344442455**********************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +el+g++ktLv+ykgrap+g+k+dW+mheyrle Dca52773.1 104 HELIGMRKTLVYYKGRAPNGQKSDWIMHEYRLE 136 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	59.045	7	156	IPR003441	NAC domain
Pfam	PF02365	7.8E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MNTCTHVPPG FRFHPTDEEL VDYYLRRKIN SRRIDLDIIK EVDLYKIEPW DLLEICKLGD 60 EDQSEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHELIGMR KTLVYYKGRA 120 PNGQKSDWIM HEYRLETDEN GPPQEEGWVV CRAFKKKPTT MRRISEHDSP YWYDHDQSSL 180 MSDMDSPNQS YQSNNNNNNN ILNNPSYTRK IPILDHNLPF QVPQQHLINL PFLENTKISN 240 TYNNSNNNNS NNNNALVLHG IEAMNNNHQG SNSTQQIAFN NDNNNQNSTS MAALIGGNNF 300 NDHGAFDDQL TDWRVLDKFV ASQLSQDDVS KEINNNNNYT STIVSSSGLL LPCPLNDQVT 360 TTTKEASTPD NASTSTSSSQ IDAWK

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MNTCTHVPPG FRFHPTDEEL VDYYLRRKIN SRRIDLDIIK EVDLYKIEPW DLLEICKLGD  60
EDQSEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHELIGMR KTLVYYKGRA  120
PNGQKSDWIM HEYRLETDEN GPPQEEGWVV CRAFKKKPTT MRRISEHDSP YWYDHDQSSL  180
MSDMDSPNQS YQSNNNNNNN ILNNPSYTRK IPILDHNLPF QVPQQHLINL PFLENTKISN  240
TYNNSNNNNS NNNNALVLHG IEAMNNNHQG SNSTQQIAFN NDNNNQNSTS MAALIGGNNF  300
NDHGAFDDQL TDWRVLDKFV ASQLSQDDVS KEINNNNNYT STIVSSSGLL LPCPLNDQVT  360
TTTKEASTPD NASTSTSSSQ IDAWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-49	7	157	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021721846.1	1e-157	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-121	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A0J8CQ75	1e-152	A0A0J8CQ75_BETVU; Uncharacterized protein
STRING	XP_010672023.1	1e-153	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	4e-98	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]