PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca52922.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 747aa MW: 86583.1 Da PI: 8.5647

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca52922.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.3e-20	46	139	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA GF+vr+ ++kk r+g ++++ +vC++eg+ +++kk +ek++r+++ +r+gCka++++ ++ +g +v+k+++ HnHel+ Dca52922.1 46 QFYKIYALASGFDVRRYTTKKW-RDGAVKTKLLVCNREGFWKPKKKLevndvdAEKQERRKKIHRVGCKARMRLFMM-NGIVCVDKFNEYHNHELV 139 6**************99887.8999*************99989999989999999*************9.**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-16	46	139	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.9E-30	261	353	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.175	541	579	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0066	554	581	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 747 aa Download sequence Send to blast
MDNLQIIPVE GEVNEGLEEG QFCRSVEDAF TPFVGKQFEN IEEAIQFYKI YALASGFDVR 60 RYTTKKWRDG AVKTKLLVCN REGFWKPKKK LEVNDVDAEK QERRKKIHRV GCKARMRLFM 120 MNGIVCVDKF NEYHNHELVS VENREFQKLA RHLSAYHKEL IVSNSRLNIG ATKTYRMLKE 180 QVNGYQNIGA SLADFKNFHT AVKCFIHERD GQLFVDHFKS MKETRAGFYF DYDIDEDGSL 240 RRAIWADGYA RKNYAVFGDA VAFDPTYSTN RYSMVFTPFT GVDNHRKSVT FAGALIAKED 300 YESFNWVFSR FLHAMDGKEP EYIITDQDPG IIKSVNSVFK KARHRFCMWH IMNKVPTKFG 360 ANKADYQIFL KKLNAIIWDV NIEPEEFDMR WVETMEEHGV GVGDWFEEAF AIRKQWIMAH 420 CKDLKMGGIM RTTQRSESEN RFFKKFEHKY GTLVEFWMRF ESAMDQQRHN YKKLDNESSQ 480 SSAKLIGSTE LEKHGVTVFT DVIFKEFQKE LMSSMTTCRC VGFRVEDGYE ISSVKDAERD 540 LVVEVRYSTG TKSATCSCGL FHSWGIVCRH VIWIYAGLGF KKLPDESIPI RWRKDALDHS 600 ALTFDSMDSL KGKTIEDDQL ELSTLWAEFH QTVSVVRAHG KKSVESLCKL VKEFRLGLSN 660 NCENMSKDKE MEQLLGCKVS TEISILPPKQ SKNKGTAKRL TSMKSKAVEV AKKPKRMCKN 720 CKQMANHDKR NCPNPYVESL ELVEELN

Sequence ? help Back to Top

Protein Sequence Length: 747 aa Download sequence Send to blast

MDNLQIIPVE GEVNEGLEEG QFCRSVEDAF TPFVGKQFEN IEEAIQFYKI YALASGFDVR  60
RYTTKKWRDG AVKTKLLVCN REGFWKPKKK LEVNDVDAEK QERRKKIHRV GCKARMRLFM  120
MNGIVCVDKF NEYHNHELVS VENREFQKLA RHLSAYHKEL IVSNSRLNIG ATKTYRMLKE  180
QVNGYQNIGA SLADFKNFHT AVKCFIHERD GQLFVDHFKS MKETRAGFYF DYDIDEDGSL  240
RRAIWADGYA RKNYAVFGDA VAFDPTYSTN RYSMVFTPFT GVDNHRKSVT FAGALIAKED  300
YESFNWVFSR FLHAMDGKEP EYIITDQDPG IIKSVNSVFK KARHRFCMWH IMNKVPTKFG  360
ANKADYQIFL KKLNAIIWDV NIEPEEFDMR WVETMEEHGV GVGDWFEEAF AIRKQWIMAH  420
CKDLKMGGIM RTTQRSESEN RFFKKFEHKY GTLVEFWMRF ESAMDQQRHN YKKLDNESSQ  480
SSAKLIGSTE LEKHGVTVFT DVIFKEFQKE LMSSMTTCRC VGFRVEDGYE ISSVKDAERD  540
LVVEVRYSTG TKSATCSCGL FHSWGIVCRH VIWIYAGLGF KKLPDESIPI RWRKDALDHS  600
ALTFDSMDSL KGKTIEDDQL ELSTLWAEFH QTVSVVRAHG KKSVESLCKL VKEFRLGLSN  660
NCENMSKDKE MEQLLGCKVS TEISILPPKQ SKNKGTAKRL TSMKSKAVEV AKKPKRMCKN  720
CKQMANHDKR NCPNPYVESL ELVEELN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	87	105	KKKLEVNDVDAEKQERRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-76	FAR1-related sequence 5