PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53207.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 341aa    MW: 38584.6 Da    PI: 4.6383
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53207.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.7e-12212307193
                 EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f k+lt  d  +  +rl +pk++ae++  + + ++++ l ++d++g+ W++ l++   kks++yvl  G++   +  + kegD + F+++   ++ lv
  Dca53207.1 212 FSKKLTATDCKSGpNRLLVPKHHAETFlpMPDRQQKMALDVKDTQGNMWNLHLCWwvHKKSRKYVLD-GTRPCIETMNWKEGDLLKFYRET-PSGDLV 307
                 778998888888889*********999*955666899******************666777779999.********************543.555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-18209313IPR015300DNA-binding pseudobarrel domain
CDDcd100175.15E-12210312No hitNo description
SuperFamilySSF1019368.5E-13211310IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.9E-4212314IPR003340B3 DNA binding domain
PfamPF023624.4E-9212302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MLFFSSPLIR KIQAGFLDAL RNVVVVGCHS QWTIFYSFNI VEIEDSAACK DGTFCLYYHK  60
DEDGWQKCGR CEKGLHCGCI MALNSFELTD GFEIICKECA EKPTFMPSDN GASSSAPNPV  120
DNSQLDVSSV FEKPIDYSQL DVSSVFEKLM DDEFLFDSLL DNDLWNPDSL LNNDLWNPDS  180
LLNNDLSNPE TVAMEANNNN YQLPQPELSF LFSKKLTATD CKSGPNRLLV PKHHAETFLP  240
MPDRQQKMAL DVKDTQGNMW NLHLCWWVHK KSRKYVLDGT RPCIETMNWK EGDLLKFYRE  300
TPSGDLVMEL EKKPHTAVDA GMHPGNEPAF LGFAGGSVQR N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fas_A3e-172113128108B3 domain-containing transcription repressor VAL1
6fas_B3e-172113128108B3 domain-containing transcription repressor VAL1
6j9a_A3e-1721132123128B3 domain-containing transcription repressor VAL1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-16HSI2-like 1