PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53212.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Protein Properties

Length: 594aa MW: 64716.1 Da PI: 7.5542

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53212.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.9	3.2e-17	35	115	13	99
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ lvlp kfae+++ k +k+++l +sg sW+v++ + +++ + ++GWk+Fvk +L+e+ ++vFk++++ +f v +f++ Dca53212.1 35 LHHLVLPSKFAENMSCK--MPKKVSLVGPSGSSWDVEV--STTGNVAIVGEGWKDFVKTYKLEENYVLVFKYTRDLSF--EVLIFDQ 115 3459*****877655..6679***********..9999999***********************998777..8888876 PP
2	B3	39.3	1.1e-12	482	570	1	89
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f v+ p +v ++ l++p + +++h + +++ +++l+ + W v + +y +++ +++GWk+F+ +n+L++ D++vFk ++ + Dca53212.1 482 FHVVMRPTSVYERFYLCIPAEWVDKHFSCNHQ--KVVLRA-GEKIWVVMFhNYGSDGQSAGFSTGWKSFALENNLEDSDVCVFKPAtQNdNA 570 6789999*****************544333..566555.88999999933444555599*********************54243233 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	13.267	23	116	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	2.35E-20	23	115	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.13E-18	25	114	No hit	No description
SMART	SM01019	2.4E-14	26	116	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.5E-19	26	115	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.3E-14	34	115	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	6.67E-15	482	579	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.096	482	581	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-8	482	576	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.3E-17	482	579	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	6.6E-11	482	569	IPR003340	B3 DNA binding domain
CDD	cd10017	1.72E-15	482	579	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence Send to blast
MKNGESEEGK TWEEELYWKH FNAVHFYQVL PNDFLHHLVL PSKFAENMSC KMPKKVSLVG 60 PSGSSWDVEV STTGNVAIVG EGWKDFVKTY KLEENYVLVF KYTRDLSFEV LIFDQENLCE 120 KEGTYFVKKG LSKPNDKVGR KRSVEEAASR EMMDGNDDNG GSDCVLSKKS KRCSGGAADN 180 GKRNVVLEAP RITPSDDWDD VVVVSSGGTP ICQNEAEVTG CVTSEKLKKC SADQGKKSVG 240 EAPVTALVEF KSSDKTRTKA VEVASSGGKP ICQNEAEVTG CVTSEKLKKC SVDQGKKSVG 300 EAPVTVSVGL KSSDKTKTKA VEVASSGVRT NEADVADDAP ISVLISGLVA SNSKRLSAKP 360 SDNTIVNCTL NQQQQIPIGD GEKAMNEVAV LSPGNNGYTL SNTLSAEAKN GKGTPGTIRS 420 REVGAKKSLS VRAIPRSGKK LALKSDTQRV SKEYTSRRRP VTDEEKEAAL KRATEALTEG 480 GFHVVMRPTS VYERFYLCIP AEWVDKHFSC NHQKVVLRAG EKIWVVMFHN YGSDGQSAGF 540 STGWKSFALE NNLEDSDVCV FKPATQNDNA RIFDVEIFRV VPEITPLTPV VCSI

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence Send to blast

MKNGESEEGK TWEEELYWKH FNAVHFYQVL PNDFLHHLVL PSKFAENMSC KMPKKVSLVG  60
PSGSSWDVEV STTGNVAIVG EGWKDFVKTY KLEENYVLVF KYTRDLSFEV LIFDQENLCE  120
KEGTYFVKKG LSKPNDKVGR KRSVEEAASR EMMDGNDDNG GSDCVLSKKS KRCSGGAADN  180
GKRNVVLEAP RITPSDDWDD VVVVSSGGTP ICQNEAEVTG CVTSEKLKKC SADQGKKSVG  240
EAPVTALVEF KSSDKTRTKA VEVASSGGKP ICQNEAEVTG CVTSEKLKKC SVDQGKKSVG  300
EAPVTVSVGL KSSDKTKTKA VEVASSGVRT NEADVADDAP ISVLISGLVA SNSKRLSAKP  360
SDNTIVNCTL NQQQQIPIGD GEKAMNEVAV LSPGNNGYTL SNTLSAEAKN GKGTPGTIRS  420
REVGAKKSLS VRAIPRSGKK LALKSDTQRV SKEYTSRRRP VTDEEKEAAL KRATEALTEG  480
GFHVVMRPTS VYERFYLCIP AEWVDKHFSC NHQKVVLRAG EKIWVVMFHN YGSDGQSAGF  540
STGWKSFALE NNLEDSDVCV FKPATQNDNA RIFDVEIFRV VPEITPLTPV VCSI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_010675170.1	3e-49	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-24	B3 family protein