PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53221.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 332aa    MW: 37862.6 Da    PI: 4.4167
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53221.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.9e-2094147356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++++eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa++k
  Dca53221.1  94 KKRRLSNEQVQFLEKSFETDNKLEPERKIQLAKELGLQPRQVAIWFQNRRARWK 147
                 56689************************************************9 PP
2HD-ZIP_I/II125.52.4e-4093183191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrls+eqv++LE+sFe+++kLeperK +la+eLglqprqva+WFqnrRAR+ktkq+Ekd+++L+++++ lk++ e L ke+e+L++e+
   Dca53221.1  93 EKKRRLSNEQVQFLEKSFETDNKLEPERKIQLAKELGLQPRQVAIWFQNRRARWKTKQMEKDFDKLQANFNCLKSDYECLLKEKEKLQAEV 183
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-2082151IPR009057Homeodomain-like
PROSITE profilePS5007118.09189149IPR001356Homeobox domain
SMARTSM003898.0E-2192153IPR001356Homeobox domain
PfamPF000464.0E-1794147IPR001356Homeobox domain
CDDcd000867.24E-1994150No hitNo description
Gene3DG3DSA:1.10.10.606.2E-2096156IPR009057Homeodomain-like
PRINTSPR000317.7E-6120129IPR000047Helix-turn-helix motif
PROSITE patternPS000270124147IPR017970Homeobox, conserved site
PRINTSPR000317.7E-6129145IPR000047Helix-turn-helix motif
PfamPF021832.2E-13149190IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAKRVFGDGI GGGGSTTTTT VLLQNQRLFS APHSLEPFSL SGSSSSFLGS SSMVSFEDVC  60
GGGTKRSERP FFCIYDQEEV GDDDYDEYLH QPEKKRRLSN EQVQFLEKSF ETDNKLEPER  120
KIQLAKELGL QPRQVAIWFQ NRRARWKTKQ MEKDFDKLQA NFNCLKSDYE CLLKEKEKLQ  180
AEVLHLTDKL HVKEQGNSDS NTMSEQLQTI QQSANVESAS ESDEQHASLF EYNKQEDLSS  240
AKSDVIDSDS SYYVEPGESS YAFEPDQSDI SQDDEDYLNK TLLHSTHVFP KIEDDVDTPA  300
NPGHFGLTEE DHAPLFWPYW DINLKIPSSL YM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733776.11e-134homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0K9R4D11e-126A0A0K9R4D1_SPIOL; Uncharacterized protein
STRINGXP_010678585.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.11e-43homeobox 1