PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53252.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91916.5 Da    PI: 6.3669
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53252.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  Dca53252.1 16 KYVRYTPEQVEALERLYHECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 74
                5679*****************************************************97 PP
2START175.63e-551603682205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W  +++++++l+v+ ++  g+++l +++l
  Dca53252.1 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWFCDCRAVDVLNVLPTAngGTIELLYMQL 257
                 7899******************************************************.8888888888****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  +++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h +l+ ++++++lr+l++s+++ ++
  Dca53252.1 258 YAPTTLAPaRDFWLLRYTSVMEDGSLVVCERSLNNTQNGPSmpaVQNFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEPWSVPEVLRPLYESSTVVAQ 356
                 ****************************************999899***************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt++a+l+++++
  Dca53252.1 357 KTTMAALRQLRQ 368
                 ********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3541175IPR001356Homeobox domain
SMARTSM003894.0E-151379IPR001356Homeobox domain
SuperFamilySSF466891.45E-161679IPR009057Homeodomain-like
CDDcd000866.64E-161676No hitNo description
PfamPF000463.0E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-181874IPR009057Homeodomain-like
CDDcd146861.28E-668107No hitNo description
PROSITE profilePS5084824.946150365IPR002913START domain
CDDcd088751.16E-78154370No hitNo description
SuperFamilySSF559611.65E-37159371No hitNo description
Gene3DG3DSA:3.30.530.203.3E-22159366IPR023393START-like domain
SMARTSM002342.3E-41159369IPR002913START domain
PfamPF018521.1E-52160368IPR002913START domain
PfamPF086705.5E-51693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MPMSCKDGKG VMDNGKYVRY TPEQVEALER LYHECPKPSS LRRQQLIRDC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSHLV YENGYFRQQT  120
QKAGIASKDT SCESVVSSGQ QHLTPQHPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIVAISHG CPGVAARACG LVGLEPTRVA EILKDRPSWF CDCRAVDVLN  240
VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTSVMED GSLVVCERSL NNTQNGPSMP  300
AVQNFVRAEM LPSGYLIRPC EGGGSIIHIV DHLNLEPWSV PEVLRPLYES STVVAQKTTM  360
AALRQLRQIA QEISQPTVSN WGRRPAALRD LSQRLNRGFN EALNGFTDEG WTMIGNDGID  420
DVTVLVNSSP DKLMALNLTY ANGFSAVSNT VLCAKASMLL QNVPPAVLLR FLREHRSEWA  480
DNNIDTYLAA ATKISPCSLP GTRIGGFGNQ VILPLAHTIE HEELLEVIKL EGVVSCPEDA  540
MMPRDMFLLQ MCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP LDSAKEASSP  600
NRTLDLASSL EIGPSVSKSA GNQSASATNM RSVMTIAFQF AFESHLQDNV TSMARQYVRS  660
IISSVQRVAL ALSPHMGSQA GLRSPRGNPE AHTLASWICQ SYRCFLGVEL LKSAGEGGDA  720
VLKSLWHHSD AIMCCTLKAL PVFTFANQAG LDMLETTLVA LQDITLEKIL DEHGRKTLCS  780
EFPQILQQGF ACLQGGICLS SMGRPISYER AVAWKVLNEE ENAHCICFMF INWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691423.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15 isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A0K9RV390.0A0A0K9RV39_SPIOL; Uncharacterized protein
STRINGXP_010691422.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]