PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53616.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 454aa MW: 50163.5 Da PI: 9.7306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53616.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34	5.3e-11	366	411	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er R ++i +++ +L++l+P+ +k + a++L +Av+YI++Lq Dca53616.1 366 SIAERVRKNKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIRDLQ 411 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.85	360	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-14	363	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.15E-11	364	414	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.7E-14	365	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.3E-8	366	411	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-12	366	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MSSIMPTDMD SEIQQQQHQH HFQGFQKQSH HQKPPLNNLT RFRSAPSSYF ASFLDAADTV 60 TNSGGVSGGD RGDLSNPKGG FFNARPLSPE TENILNRFMS SMREENNSSL DKLPEIPQNT 120 GVKSETMVRV KVESNTLQHQ QQLNPRQQQD NYNTTPQKMY QSASKPPLAN YQSSGSAVGS 180 LGIKSTTQMK IGGSNSFGLA RNSSSPAGFF SDLDIDGYLK GMGNYGGCNS SIDQTSYTSG 240 QPSSTSGLVR QSSDAQGTLM RMNSLEETNF RTNQNNDNGS WADTIMSENF SSLDGRDIHI 300 KREFPEYDAS ENQTGENRSR PPPLAHHQSL PSSSAELSAV ERLLNLQDAV PLRIRAKRGC 360 ATHPRSIAER VRKNKISERM RKLQDLVPNM DKQTNTADML DLAVDYIRDL QNQVTTRAGH 420 GNGPARPATG IGPSLPQGMF CPRKQRRRRH ALKS

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MSSIMPTDMD SEIQQQQHQH HFQGFQKQSH HQKPPLNNLT RFRSAPSSYF ASFLDAADTV  60
TNSGGVSGGD RGDLSNPKGG FFNARPLSPE TENILNRFMS SMREENNSSL DKLPEIPQNT  120
GVKSETMVRV KVESNTLQHQ QQLNPRQQQD NYNTTPQKMY QSASKPPLAN YQSSGSAVGS  180
LGIKSTTQMK IGGSNSFGLA RNSSSPAGFF SDLDIDGYLK GMGNYGGCNS SIDQTSYTSG  240
QPSSTSGLVR QSSDAQGTLM RMNSLEETNF RTNQNNDNGS WADTIMSENF SSLDGRDIHI  300
KREFPEYDAS ENQTGENRSR PPPLAHHQSL PSSSAELSAV ERLLNLQDAV PLRIRAKRGC  360
ATHPRSIAER VRKNKISERM RKLQDLVPNM DKQTNTADML DLAVDYIRDL QNQVTTRAGH  420
GNGPARPATG IGPSLPQGMF CPRKQRRRRH ALKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021772031.1	1e-134	transcription factor bHLH130-like
TrEMBL	A0A173G4L3	1e-105	A0A173G4L3_HYLUD; BHLH1-like protein
STRING	XP_010673593.1	1e-118	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	3e-52	bHLH family protein