PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53658.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 449aa MW: 50824.7 Da PI: 6.9932

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53658.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.2e-17	108	191	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF++r++ +k++ +g +t vC+keg+ + + k ++r++tr gCka+ k+ ++g+++v+k+++ HnH+++ Dca53658.1 108 QFYSSYATTCGFTIRREGEKRN-AKGLPSYKTCVCNKEGEGKATGKL-----KKREVTRQGCKACACFKMVENGEYMVYKFVEAHNHPMM 191 6**************99998.7777999*******999888.....99*******************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.5E-14	108	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-26	313	407	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MESTKEDRSK AIVPFTVIQD TMMTDVSNTE TESTNAIEAT DCVGSCSGND KDTPQTEADS 60 PTVPFGNQTA ASSPESTATT SCDGVPYCRD ELKPVVGKKF ASLEQGIQFY SSYATTCGFT 120 IRREGEKRNA KGLPSYKTCV CNKEGEGKAT GKLKKREVTR QGCKACACFK MVENGEYMVY 180 KFVEAHNHPM MTPTTMVHLR SGRELNVVHK KMIIDNSRVN HGPVKTFRMF KEYVKGYNNI 240 GASLHDFKNF SRDVKRFLKE YDAQMIIETF IQKRAMCPSF YFDFDVDEDQ KLTKLFWADP 300 ISIKNYALYG DSCSFDTTFD FNKYKMVFAP FTGVDNHKRY VTFGAGLISK EDADSFSWLF 360 ENFLKAVGGC YPTTLITDQC LGIKAGVDKV FSDKTHHRYC MWHITKKMPE KVGASVSRDT 420 NFLKEISAII WGDDVEIEEF EAEWKKIID

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MESTKEDRSK AIVPFTVIQD TMMTDVSNTE TESTNAIEAT DCVGSCSGND KDTPQTEADS  60
PTVPFGNQTA ASSPESTATT SCDGVPYCRD ELKPVVGKKF ASLEQGIQFY SSYATTCGFT  120
IRREGEKRNA KGLPSYKTCV CNKEGEGKAT GKLKKREVTR QGCKACACFK MVENGEYMVY  180
KFVEAHNHPM MTPTTMVHLR SGRELNVVHK KMIIDNSRVN HGPVKTFRMF KEYVKGYNNI  240
GASLHDFKNF SRDVKRFLKE YDAQMIIETF IQKRAMCPSF YFDFDVDEDQ KLTKLFWADP  300
ISIKNYALYG DSCSFDTTFD FNKYKMVFAP FTGVDNHKRY VTFGAGLISK EDADSFSWLF  360
ENFLKAVGGC YPTTLITDQC LGIKAGVDKV FSDKTHHRYC MWHITKKMPE KVGASVSRDT  420
NFLKEISAII WGDDVEIEEF EAEWKKIID

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010668319.1	1e-125	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010668319.1	1e-125	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-57	FAR1-related sequence 5