PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53970.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 236aa    MW: 26746.2 Da    PI: 5.0602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53970.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.4e-0540115254
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C.........................TTS-STCHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPk.as......................kapskKlsKaeiLekAveYIksL 54 
                 r+ + erE+  Rd++N+ f++L + l   a+                        + + + Ka iL ++++++k++
  Dca53970.1  40 RVVKAEREKLKRDQLNELFNKLGSFLGMlAFlptfapfnvdlhesfpemffcaELSEQNNGKACILNETIRHLKDM 115
                 67789*********************9977799*******************666666699***********9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.63238115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-840140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-94066IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-993140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDVFDDDNDH LVNEKSDAPE NEVDDGSPPT KKRRGRIPIR VVKAEREKLK RDQLNELFNK  60
LGSFLGMLAF LPTFAPFNVD LHESFPEMFF CAELSEQNNG KACILNETIR HLKDMVSQIR  120
SLRNENSTLL SESQYVTTEN HELKDENVAL EDQIKRVKTE LQEKLGQSKP DLNITSREPP  180
ILGPLYVVPM TPNVQAASQP PAAVRKPQPR YPTPADSWPL HLLSKQPEMT TESTAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685315.18e-73PREDICTED: transcription factor bHLH47
RefseqXP_010685316.18e-73PREDICTED: transcription factor bHLH47
TrEMBLA0A0K9RH894e-66A0A0K9RH89_SPIOL; Uncharacterized protein
STRINGXP_010685315.13e-72(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.38e-35bHLH family protein