PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53982.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32948.4 Da    PI: 4.9441
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53982.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1976129356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k++++t eq++ Le+ Fe++ ++  e++++LAk+lgL+ rq+ +WFqNrRa++k
  Dca53982.1  76 KKRRMTIEQVQFLEKSFEMDIKLEPERKAQLAKELGLQPRQIAIWFQNRRARWK 129
                 56689************************************************9 PP
2HD-ZIP_I/II126.31.3e-4075167193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrr++ eqv++LE+sFe++ kLeperK++la+eLglqprq+a+WFqnrRAR+ktkq+Ekd++aL+++y+ lk++ ++L ke+e+L++e+++
   Dca53982.1  75 EKKRRMTIEQVQFLEKSFEMDIKLEPERKAQLAKELGLQPRQIAIWFQNRRARWKTKQMEKDFDALQASYNGLKSDYDSLVKEKEKLKDEVDN 167
                  69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.94E-2059133IPR009057Homeodomain-like
PROSITE profilePS5007117.4171131IPR001356Homeobox domain
SMARTSM003896.2E-1974135IPR001356Homeobox domain
PfamPF000461.5E-1676129IPR001356Homeobox domain
CDDcd000865.94E-1776132No hitNo description
Gene3DG3DSA:1.10.10.601.1E-1977138IPR009057Homeodomain-like
PRINTSPR000312.1E-6102111IPR000047Helix-turn-helix motif
PROSITE patternPS000270106129IPR017970Homeobox, conserved site
PRINTSPR000312.1E-6111127IPR000047Helix-turn-helix motif
PfamPF021839.5E-16131173IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MANSGVRRVF GSQPFFISGS SSSSSSSSFL GSSSMVSFED VCWGGKRSSG RPFFCTYDQE  60
DNGDDDYDEF LHQPEKKRRM TIEQVQFLEK SFEMDIKLEP ERKAQLAKEL GLQPRQIAIW  120
FQNRRARWKT KQMEKDFDAL QASYNGLKSD YDSLVKEKEK LKDEVDNLTS KLQLKEQKPF  180
NQSKTVHRET VVESNSESEE RRHLSVFGYN KQEDLSSAKS DVVDSDSPHY VDRGAPCAFE  240
ADQSSHAFTE VKDVDQSANF ELSGDEHAQL LWPYWDINLK IPNSLNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733776.11e-111homeobox-leucine zipper protein HAT5-like
TrEMBLA0A0K9R4D11e-105A0A0K9R4D1_SPIOL; Uncharacterized protein
STRINGXP_010678585.13e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.18e-39homeobox 1