PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53999.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

MYB_related

Protein Properties

Length: 275aa MW: 30057.3 Da PI: 9.901

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53999.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.8	1.4e-14	86	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Dca53999.1 86 PWTEEEHKLFLVGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 130 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.1	79	135	IPR017930	Myb domain
SuperFamily	SSF46689	2.92E-17	81	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.0E-17	82	133	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-10	83	133	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-11	85	130	IPR009057	Homeodomain-like
Pfam	PF00249	9.0E-12	86	130	IPR001005	SANT/Myb domain
CDD	cd00167	1.50E-9	86	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MSNDQMPETT AGGDGGGEFM LFGVRVVVDS MRKSVSLNNL SQYDHLIDAD AGAVAVAGNY 60 ASADDTAVRH SSAAAAVNRE RKRGVPWTEE EHKLFLVGLQ KVGKGDWRGI SRNFVKTRTP 120 TQVASHAQKY FLRRSNLNRR RRRSSLFDIT TDSVAANSSI DQSQQQKQQS VQQQQKQQQV 180 GVESMETNFE APKVKFTISQ SPIYDRAANS SSSNNSKSMV NFDLNSNSNM NANSNAFSFD 240 SPPLSLNLSL SMSTTDVAFP MTLGFGKQDG VISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678650.1	1e-69	PREDICTED: transcription factor MYB1R1
Swissprot	Q2V9B0	2e-57	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A4D9AB88	3e-68	A0A4D9AB88_SALSN; Uncharacterized protein
STRING	XP_010678650.1	5e-69	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	8e-48	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]