PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family LBD
Protein Properties Length: 246aa    MW: 27382.6 Da    PI: 7.607
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.16e-38311311100
   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
              +C aCk+lrrkC+k+Cv+apyf +eq +++fa+vhk+FGasn +kl+ ++p+++r d++ +l+yeA  r+rdPvyG++++i++lqqq+ +++aela ++++
  Dca54.1  31 PCGACKYLRRKCVKGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLILRVPPNKRLDTVVTLCYEALSRVRDPVYGCLSHIFALQQQVVNMQAELAFAQAK 131
              7***********************9989********************************************************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.89530132IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-3731129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MSNTHHQQQP WQNNNNINNN NNNINNSNNG PCGACKYLRR KCVKGCVFAP YFDSEQGTAH  60
FAAVHKVFGA SNASKLILRV PPNKRLDTVV TLCYEALSRV RDPVYGCLSH IFALQQQVVN  120
MQAELAFAQA KLSTVHRHAP TFPIVDHGQT PQLLLDQIAA LSTTTTTTPS NNVMTSTPFF  180
FDNTTSTHSH QPMSSTLAAE LSNFYSMSDY NQHDDNGVFE DGDLQSLTRE FVSKYLPGVK  240
FKSEPQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-34291329111LOB family transfactor Ramosa2.1
5ly0_B3e-34291329111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692268.13e-99PREDICTED: LOB domain-containing protein 19
SwissprotO813222e-63LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A0K9QWU81e-96A0A0K9QWU8_SPIOL; Uncharacterized protein
STRINGXP_010692268.11e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.16e-63LOB domain-containing protein 31