PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca54007.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 237aa MW: 27046.5 Da PI: 4.8431

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca54007.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.1	4.3e-05	41	116	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksL 54 r+ + erE+ Rd++N+ f++L + l ++ + + + Ka iL ++++++k++ Dca54007.1 41 RVVKAEREKLKRDQLNELFNKLGSFLGMLTyfptfapfnidlhesfpemffcaELSEQNNGKACILNETIRHLKDM 116 67789*******************99777999**************666666699********99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.575	39	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-7	41	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.0E-8	41	67	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.0E-8	94	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDVFYDDDND HLVNEESDAP ENEVDDGSPP TKKRRGRIPI RVVKAEREKL KRDQLNELFN 60 KLGSFLGMLT YFPTFAPFNI DLHESFPEMF FCAELSEQNN GKACILNETI RHLKDMVSQI 120 RSLRNENLTL LSESQYVTTE NHELKDENVT LEDQIKRVKT ELQEKLGQSK PDLNITSREP 180 PILGPLYVVP MTPNVQAASQ PPAAVRKPQP RYPTPADSWP LHLLSKQPEM TTESSAS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685315.1	1e-72	PREDICTED: transcription factor bHLH47
Refseq	XP_010685316.1	1e-72	PREDICTED: transcription factor bHLH47
TrEMBL	A0A0K9RH89	1e-65	A0A0K9RH89_SPIOL; Uncharacterized protein
STRING	XP_010685315.1	5e-72	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	2e-34	bHLH family protein