PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54105.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HSF
Protein Properties Length: 318aa    MW: 33803.4 Da    PI: 6.1552
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54105.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.9e-35301212102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++i+
    Dca54105.1  30 FLTKTYQLVDDSSVDDLISWNNDGSAFIVWRPAEFARDLLPKFFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGEKTLLRDIQ 117
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Dca54105.1 118 RRKI 121
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5626119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-3727119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-3527119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.9E-203053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-208193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MPADQTVESS GGGGGGSCGS DSQRTLPTPF LTKTYQLVDD SSVDDLISWN NDGSAFIVWR  60
PAEFARDLLP KFFKHNNFSS FVRQLNTYGF RKVVPDRWEF ANDCFRRGEK TLLRDIQRRK  120
ISPAATATPN PPATPSAVTI AANPAAVLRT VSPSNSGEEQ VHSSNSSPAP GTAAVQRSTS  180
GVTNTAEILE ENERLRKENM SLSQELNHLR GLCNNILSLM SNYASGQQVT GGLPEGRPLE  240
LLPSKPSPVI TLEASPCGGS SGGRTGSGGG KTEVGEENGE TCPKLFGVSI GAKRARRDED  300
DGGESIVANR HEPQSSGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-253011929129Heat shock factor protein 1
5d5v_B2e-253011929129Heat shock factor protein 1
5d5v_D2e-253011929129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261269GGRTGSGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021754130.11e-142heat stress transcription factor B-2b-like
SwissprotQ9T0D36e-93HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A0K9QAJ41e-140A0A0K9QAJ4_SPIOL; Uncharacterized protein
STRINGXP_010676525.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.15e-79HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]