PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca54204.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YB

Protein Properties

Length: 290aa MW: 31551.8 Da PI: 7.9705

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca54204.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	154.8	1.5e-48	143	225	15	97
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 rimkk+lPanakiskdaketvqecvsefisf+t+easd+cqrekrktingddllwa++tlGfedyveplkvyl+++relege+ Dca54204.1 143 RIMKKALPANAKISKDAKETVQECVSEFISFITGEASDNCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFRELEGER 225 9********************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50966	10.324	63	95	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-5	65	93	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.3E-8	70	97	IPR006564	Zinc finger, PMZ-type
SuperFamily	SSF47113	1.61E-33	142	227	IPR009072	Histone-fold
Pfam	PF00808	1.1E-22	142	199	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.1E-44	143	227	IPR009072	Histone-fold
PRINTS	PR00615	1.8E-19	163	181	No hit	No description
PRINTS	PR00615	1.8E-19	182	200	No hit	No description
PRINTS	PR00615	1.8E-19	201	219	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MEWMRRYVMK RNFEKREGAE KVQGNIMPYA QKHVKTVLED AKYCVVVRAT TELFEVDCRG 60 DCQTVNLQTR SCSCYQWDLT GLPCVHVVGA ILKQRLNVED FIDEAYSKAK YLLAYEPVVK 120 PMPGSKQWEK SGLPEPEPPV GRRIMKKALP ANAKISKDAK ETVQECVSEF ISFITGEASD 180 NCQREKRKTI NGDDLLWAMT TLGFEDYVEP LKVYLQRFRE LEGERTGNPI QGNGGGGGGG 240 SSGGVSSGGN GGGYGNGGGG SGGVNNGVMM MGHVIGQSGQ GYGGHGYGAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-37	143	220	16	93	NF-YB
4awl_B	1e-37	143	220	17	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-37	143	220	17	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003634760.1	9e-55	PREDICTED: nuclear transcription factor Y subunit B-3
TrEMBL	A0A438ERG5	2e-53	A0A438ERG5_VITVI; Nuclear transcription factor Y subunit B-3
STRING	VIT_19s0015g00440.t01	3e-54	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47640.1	6e-54	nuclear factor Y, subunit B2