PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54455.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family WRKY
Protein Properties Length: 234aa    MW: 26815.3 Da    PI: 5.7915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54455.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY29.12e-09851262159
                 -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  r+YYrCt++   +C+++k++++ +e+p+  + +Y+ +H+++
  Dca54455.1  85 RRHYYRCTHKnerNCEATKQIQQVSENPTKYKLIYNKNHTCN 126
                 69*******99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.5E-581127IPR003657WRKY domain
PfamPF031068.7E-1083125IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-1083126IPR003657WRKY domain
SuperFamilySSF1182908.63E-983127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVRNIVLQHY SLVKLEDSYN NNNNHHDYLK ALDYHSMVAL EAYANSVATL QNLNFNLGFV  60
ENRKRNDPCK SVVSSDQSSP KYNKRRHYYR CTHKNERNCE ATKQIQQVSE NPTKYKLIYN  120
KNHTCNHNII NTTSSYTINS TPDDHPSSAI LLSFDGSNPV NPMMFSPLFN TTVSDDKKTS  180
ETSSSSSKTS FEESENTSTV IDVEENNSSS STSLNLDEDY NVFIAEFYEI FPDW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17985PKYNKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.28e-08WRKY DNA-binding protein 55