PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54476.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 661aa    MW: 72849.1 Da    PI: 7.2858
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54476.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.64.6e-3073157187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+laL+++r++m+  +r+++lk+plWe+vs+km+e g++rs+k+Ckek+en+ k++k++k+g+ ++++++  t+++fdqlea
  Dca54476.1  73 RWPRQETLALLKIRSDMDAVFRDSSLKGPLWEQVSRKMSELGYHRSSKKCKEKFENVYKYHKRTKDGRVGKSEGK--TYRFFDQLEA 157
                 8********************************************************************975544..6*******85 PP
2trihelix106.71.6e-33492577187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev aLi++r++++e+++++  k+plWee+s+ m+  g++r+pk+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  Dca54476.1 492 RWPKAEVEALIKLRTQLDEKYQESGPKGPLWEEISSGMKTLGYNRNPKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 577
                 8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.02670132IPR001005SANT/Myb domain
CDDcd122033.26E-2372137No hitNo description
PROSITE profilePS500906.81872130IPR017877Myb-like domain
PfamPF138376.0E-2072158No hitNo description
PROSITE profilePS500908.014485549IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-5485548IPR009057Homeodomain-like
SMARTSM007172.6E-5489551IPR001005SANT/Myb domain
SuperFamilySSF466899.35E-5491573IPR009057Homeodomain-like
PfamPF138375.2E-23491578No hitNo description
CDDcd122035.43E-27491556No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 661 aa     Download sequence    Send to blast
MLGSTGGLDG GSSGEAGSSP HDDSGGGGGE LVGRSSIMSP SGGGGDEGAG GSGGGGGGGG  60
EYYEGDRSSG GNRWPRQETL ALLKIRSDMD AVFRDSSLKG PLWEQVSRKM SELGYHRSSK  120
KCKEKFENVY KYHKRTKDGR VGKSEGKTYR FFDQLEALEH HPHHHGHTHH SPFQQPPRGQ  180
QQQTAQAAVP VTMVIPPGTH HHHHGAATTS HHHQHHHVTV TSSPHPISVV HTSPHMQMNV  240
LHQQHSRPPP MQVHQSSPIQ MENGSSPSAT PSSSSLGEFD GEEGDEDAVL GGRNRKRKWK  300
DFFERLTKEV ISKQEELHKK FLDAVEKRDR DRLARDEAWR AQEIGRLNRE HQILVQERSM  360
AAAKDAALMA FLQKLSDQHQ IPLPIAIQTQ IQAQTQTPTT QTQTQVPVVV ASTTITTPIQ  420
PQPPPPPPQQ SQQTRVLETP ISLATPKPVQ QPIQQQQQQQ PLVVTSNAGN EEIHKTNNGS  480
GSDTQQQASQ SRWPKAEVEA LIKLRTQLDE KYQESGPKGP LWEEISSGMK TLGYNRNPKR  540
CKEKWENINK YFKKVKESNK RRPEDSKTCP YFHQLDALYR GKTPKIEFNS PPPPPQPPQH  600
HHHQQTSDDE DGDDSDDDEE GSGSGYEIVA NNNNNNNANA ASSAAITTTT TTTTTTTTTA  660
E
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848795.10.0trihelix transcription factor GTL1
SwissprotQ391172e-82TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0K9RCU70.0A0A0K9RCU7_SPIOL; Uncharacterized protein
STRINGXP_009618661.11e-167(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-51Trihelix family protein