PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca54524.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 401aa MW: 45501.1 Da PI: 5.3713

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca54524.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.5	1.2e-09	98	191	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 f +YA + GF+v +++++ + e+ ++ + ++ gk+e++ + + ++r+++++ tgCka+++ + + d+ +++++++leHnHel Dca54524.1 98 FIISYALRKGFEVFTRSNSLK---AEFRNAGVTRKCGGKKEPRYHMmerlrlackKGGQKRSEKSNVTGCKACFEGTIQ-DDGFVIKTVHLEHNHELD 191 5568*******99988776...33334444444455555555556699999988889999999******9999.899***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-7	98	192	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-16	312	373	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MSGNNDVWFD LNEYYDEEFG GSEGFFDENE GNEIELNSNG GSIEPVENSI EEVVSTEESP 60 NPVEEAVNAV EGGNDTNDVV VDPTVGMVFP NCDSFAEFII SYALRKGFEV FTRSNSLKAE 120 FRNAGVTRKC GGKKEPRYHM MERLRLACKK GGQKRSEKSN VTGCKACFEG TIQDDGFVIK 180 TVHLEHNHEL DPANSRFKVS SRTITDYFKE RIVLNDRAGI PITKNFNAMV IEAGGHENLP 240 FNHRDLRNLV NLERRLERIN GDAAALEEYF VKMKTENPDF FYAIKKDNDG RLQNVFWADA 300 RCRAMFKVFG DVVTYDTTFL CNRYRLPFSP FIGVNHHGNS ICFAAALITN EDTETFIWVF 360 ERWLECMGKA PPVIRLLGQA NARHPHPLKK DPSLRGLTFR T

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MSGNNDVWFD LNEYYDEEFG GSEGFFDENE GNEIELNSNG GSIEPVENSI EEVVSTEESP  60
NPVEEAVNAV EGGNDTNDVV VDPTVGMVFP NCDSFAEFII SYALRKGFEV FTRSNSLKAE  120
FRNAGVTRKC GGKKEPRYHM MERLRLACKK GGQKRSEKSN VTGCKACFEG TIQDDGFVIK  180
TVHLEHNHEL DPANSRFKVS SRTITDYFKE RIVLNDRAGI PITKNFNAMV IEAGGHENLP  240
FNHRDLRNLV NLERRLERIN GDAAALEEYF VKMKTENPDF FYAIKKDNDG RLQNVFWADA  300
RCRAMFKVFG DVVTYDTTFL CNRYRLPFSP FIGVNHHGNS ICFAAALITN EDTETFIWVF  360
ERWLECMGKA PPVIRLLGQA NARHPHPLKK DPSLRGLTFR T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021840172.1	1e-103	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_021853860.1	1e-100	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-41	FAR1-related sequence 5