PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5456.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NF-YB

Protein Properties

Length: 88aa MW: 9820.52 Da PI: 4.9066

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5456.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	66.3	6e-21	11	84	3	76
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGf 76 ++d+ lP a +++i+k++lPa+ ++++da++++ ec +efi +v+se+++ c++e++kti+++ +l al G+ Dca5456.1 11 KEDASLPKATMTKIIKEMLPAEVRVARDAQDLLIECCVEFINLVSSESNEVCNKEEKKTIAPEHVLKALEGKGY 84 6899****************************************************************988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.9E-29	8	84	IPR009072	Histone-fold
SuperFamily	SSF47113	9.22E-26	12	83	IPR009072	Histone-fold
Pfam	PF00808	6.1E-23	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MEPMDIVGKT KEDASLPKAT MTKIIKEMLP AEVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNKEEKKTI APEHVLKALE GKGYAMLR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-26	12	85	12	84	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022886353.1	1e-50	protein Dr1 homolog
Refseq	XP_022886354.1	1e-50	protein Dr1 homolog
Swissprot	P49592	9e-49	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A2R6QI52	1e-48	A0A2R6QI52_ACTCH; Protein Dr1 like
STRING	Bo8g004650.1	1e-48	(Brassica oleracea)
STRING	Bo9g174680.1	1e-48	(Brassica oleracea)
STRING	Bo9g174690.1	1e-48	(Brassica oleracea)
STRING	XP_010491444.1	1e-48	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08190.1	1e-52	nuclear factor Y, subunit B12

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]