PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca54711.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 171aa MW: 19445.2 Da PI: 6.5122

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca54711.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57	6.3e-18	52	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ YA ++GF++r+ +++k ++g+ +++ vC++egk +++kk+ ++ +r+ ++ +gCka++++ +g ++++++++eH+Hel+ Dca54711.1 52 FYKIYALSIGFDIRRYSEHKW-DDGTLKTKLIVCNREGKYKSKKKTecvdnsGDNVQRRGKVLAVGCKARIRLFCL-NGLFKIDQFVEEHSHELV 144 9*************99998.8888************9999999987666677888999*****999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-14	52	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MVEMQIVPGE SGAIDAASLI GMDESYLCET AKEDFKPFVG QEFVSVDEAA GFYKIYALSI 60 GFDIRRYSEH KWDDGTLKTK LIVCNREGKY KSKKKTECVD NSGDNVQRRG KVLAVGCKAR 120 IRLFCLNGLF KIDQFVEEHS HELVSVEDRE FQKLSTSLTE YHKAFILSNI R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	6e-10	FAR1 family protein