PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca549.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 250aa    MW: 27427.3 Da    PI: 5.9598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca549.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.5e-10133180455
               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Dca549.1 133 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKAIVLDEIINYIQSLQ 180
               8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.22E-11127184No hitNo description
SuperFamilySSF474597.33E-18127196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-18129194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.885129179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-8133180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-11135185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAEIWSLTSP DSGILGLRMG SGSFGTSFLD NLLNNNTNNN NNVNDNINDN NNNISNNNNS  60
GHVYRDGSRE ESSVTEQSGS LGEGRGFVGR KKKENVSQDD FSKVVSTTNS DNHLKNSNDY  120
IHVRARRGQA TDSHSLAERA RREKISERMK VLQDLVPGCN KVIGKAIVLD EIINYIQSLQ  180
RQVEFLSMKL EAVNSGMIPS IAVNQVEASS FDPSGMMFNV HAARELAAAE GGPQPEWLHM  240
QLGGGFERTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678640.18e-92PREDICTED: transcription factor bHLH79
SwissprotQ69WS36e-57BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0K9R5V22e-81A0A0K9R5V2_SPIOL; Uncharacterized protein
STRINGXP_010678640.13e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-62BIG PETAL P