PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54927.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 684aa    MW: 76203.7 Da    PI: 6.6222
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54927.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-183081556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++t++q+++Le +++++ +p++++r++L ++lgL+ +q+k+WFqN+R++ k
  Dca54927.1 30 HRHTPDQIQRLEGFYKQCAHPDEKQRRQLGAELGLEPKQIKFWFQNKRTQTK 81
                689*********************************************9987 PP
2START124.81.1e-392084311206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 e+a +a +el+k+ ++++p+W ks+      +++  ++ +++ sk      +++e +++sg+v m++  lv  +ld   +W   ++    ka  +  ++
  Dca54927.1 208 EIAASAIDELIKLLKVDQPLWIKSPteeqYVLDYNCYYNIVAASKElkflhSRMESSKDSGLVAMDARFLVDLYLDPD-KWADLFPtvisKARSISILK 305
                 578899*******************765555678889999999888***999****************6666555555.99999999999999****** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                  g        lql+  e+ +lspl   R+f+++Ry++q +ag+wvivdvS d +   p  +s +    ++pSg++ie+++ng s+vt +e+v+++++++
  Dca54927.1 306 AGllenrsDSLQLIHEEMHVLSPLMRqREFYVLRYCQQIEAGTWVIVDVSYDFCGASPGfTSFC---WKYPSGCMIEEMPNGLSRVTCLERVEVDDSIV 401
                 *********************************************************9744443...57****************************99 PP

                 .HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 .hwllrslvksglaegaktwvatlqrqcek 206
                  h +++ lvks la+gak+w atlqr ce+
  Dca54927.1 402 vHPIYEALVKSNLAFGAKRWIATLQRICER 431
                 9***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-171477IPR009057Homeodomain-like
SuperFamilySSF466896.68E-171987IPR009057Homeodomain-like
PROSITE profilePS5007114.7062383IPR001356Homeobox domain
SMARTSM003894.2E-142587IPR001356Homeobox domain
PfamPF000463.7E-162981IPR001356Homeobox domain
CDDcd000863.63E-153084No hitNo description
PROSITE profilePS5084841.388199434IPR002913START domain
SuperFamilySSF559611.32E-29201432No hitNo description
CDDcd088751.62E-85203430No hitNo description
SMARTSM002342.7E-24208431IPR002913START domain
PfamPF018524.6E-33208431IPR002913START domain
Gene3DG3DSA:3.30.530.204.3E-8291429IPR023393START-like domain
SuperFamilySSF559611.69E-10475624No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MVSGGSSGGG SGCSEENEGC DSHTVKKSCH RHTPDQIQRL EGFYKQCAHP DEKQRRQLGA  60
ELGLEPKQIK FWFQNKRTQT KAHNERLDNS SLRNENDHFR NENLAIKEAL RNVACGSCGP  120
RGGAAATDEE RNQIREKLKQ ENLELQNEYN RLSSVVAKFM GRPLLRSELN TPDVVIPNEA  180
IRNLNPKNLG LTGQMAANPE LEKLLMTEIA ASAIDELIKL LKVDQPLWIK SPTEEQYVLD  240
YNCYYNIVAA SKELKFLHSR MESSKDSGLV AMDARFLVDL YLDPDKWADL FPTVISKARS  300
ISILKAGLLE NRSDSLQLIH EEMHVLSPLM RQREFYVLRY CQQIEAGTWV IVDVSYDFCG  360
ASPGFTSFCW KYPSGCMIEE MPNGLSRVTC LERVEVDDSI VVHPIYEALV KSNLAFGAKR  420
WIATLQRICE RYSFLREAGR FDDQLGIGRR GMIILASKMI RSYCSIFKLF GKADFHQRYE  480
LTNDKAQIAV YKSTSPDQPG GIIILAASSF WVPASPNRVF SFLNDHSARS RWDILCNGSQ  540
VSEVLQIPTG QYQSNHISIL QPRNPFEDLM IFQESAMDQL GSFIVYAPVE TSTMLDVATG  600
NSSLHVPILA SGFSILPDGP DGKAVPSTSS MKPRSGGSVI TAAFQILGCN SSSEEELSLA  660
VLSRAEAFVG RVVGVLKSAF NGPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-161homeodomain GLABROUS 11