PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca55.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

LBD

Protein Properties

Length: 237aa MW: 24869.2 Da PI: 7.8623

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca55.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.9	1.1e-40	27	127	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll+++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++ +++ Dca55.1 27 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLQNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYFQAH 127 7*********************9989*****************************************************************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.244	26	128	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-40	27	125	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010089	Biological Process	xylem development
GO:0010199	Biological Process	organ boundary specification between lateral organs and the meristem

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSCANPSSSG GGGSGSGGSG GGGGGGPCGA CKFLRRKCVA GCIFAPYFDS EQGAAHFAAV 60 HKVFGASNVS KLLQNIPVHK RLDAVVTICY EAQARLRDPV YGCVAHIFAL QQQVVNLQAE 120 LSYFQAHLAT LEVPTPPPPP PQPLMIPPHL SISDLPSAST VPATYDLSSL FDPMTQPSWP 180 MQQQHQQRGP MDLRHFGPII DNVGPIHGNN SSSSAQRGDL HVIGHIHGPS TSSSMSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-38	23	128	7	111	LOB family transfactor Ramosa2.1
5ly0_B	4e-38	23	128	7	111	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692269.1	5e-99	PREDICTED: LOB domain-containing protein 18
Swissprot	O81323	1e-70	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	A0A0K9QPJ9	6e-93	A0A0K9QPJ9_SPIOL; Uncharacterized protein
STRING	XP_010692269.1	2e-98	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	3e-71	LBD family protein

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]