PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5515.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

FAR1

Protein Properties

Length: 644aa MW: 75202.5 Da PI: 5.9422

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5515.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.9	3.7e-09	85	176	4	90
FAR1 4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +YA + GF++ +++++ e +++ vC ++g ++e + + + ++r+++++ tgCk ++ + e ++ +++ +++l+HnH+l Dca5515.1 85 FDYAMKKGFEIYTRSNNLM----EEYREAGVCRRYGGNKEPRYHmmkmhrlackKGGRKRSENSNVTGCKVFFETSVE-NELFVIRSCRLDHNHDLD 176 57*******99988776....558899999999998889999998778888999999******999.9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-7	85	177	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-18	243	319	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MAGILEEIFD LNVDYDEEVE SDSNSLPILE DENEVQEIES NAQPSNLMEQ AVITLEGQNA 60 NNVEVTEPSV GMTFENCDSF VAFCFDYAMK KGFEIYTRSN NLMEEYREAG VCRRYGGNKE 120 PRYHMMKMHR LACKKGGRKR SENSNVTGCK VFFETSVENE LFVIRSCRLD HNHDLDPENS 180 RFTVSARAIG EYFKKRIMVN DRAGIPITKN FNAMVMEAGG RLQNVFWADA RCRAMFKVSF 240 AICAFYWCES PQELYLLCPA LITNEDTDTF VWVFERWLEC MGKAPPVILS DQDKAIGKSI 300 EIVFPGIPHR LCLWHMMRNA VKNLGRLRFW KELCTDLKSV VHDILGEEEF EQAWNDMVNK 360 YGIHDNPWIK ESYNIRRRWV PCYWRGTFCA GMSSTQRSEQ ANRFFKVSVS LETGLRNFIT 420 QFEQAQQSRV EDEKTYNFIC KDRPLTYDKS VLVEEVFSKR YTNEKFKEVK EQVYAGIHTF 480 IELKMRMGSF VVYKADEKIV EPFWNERWRS YEVTIDKDAD RWRKDLIRGY EHIRAGYYNP 540 EECARVKRAM ELTAKNDYIG KLALQDEETY ALYVQVTDDL VKQLENLVGV ETVRSTREAN 600 GMSKVYGRMR LQPGECNMRY IMRNNPSQTE TQLKAPVDKR GSGR

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MAGILEEIFD LNVDYDEEVE SDSNSLPILE DENEVQEIES NAQPSNLMEQ AVITLEGQNA  60
NNVEVTEPSV GMTFENCDSF VAFCFDYAMK KGFEIYTRSN NLMEEYREAG VCRRYGGNKE  120
PRYHMMKMHR LACKKGGRKR SENSNVTGCK VFFETSVENE LFVIRSCRLD HNHDLDPENS  180
RFTVSARAIG EYFKKRIMVN DRAGIPITKN FNAMVMEAGG RLQNVFWADA RCRAMFKVSF  240
AICAFYWCES PQELYLLCPA LITNEDTDTF VWVFERWLEC MGKAPPVILS DQDKAIGKSI  300
EIVFPGIPHR LCLWHMMRNA VKNLGRLRFW KELCTDLKSV VHDILGEEEF EQAWNDMVNK  360
YGIHDNPWIK ESYNIRRRWV PCYWRGTFCA GMSSTQRSEQ ANRFFKVSVS LETGLRNFIT  420
QFEQAQQSRV EDEKTYNFIC KDRPLTYDKS VLVEEVFSKR YTNEKFKEVK EQVYAGIHTF  480
IELKMRMGSF VVYKADEKIV EPFWNERWRS YEVTIDKDAD RWRKDLIRGY EHIRAGYYNP  540
EECARVKRAM ELTAKNDYIG KLALQDEETY ALYVQVTDDL VKQLENLVGV ETVRSTREAN  600
GMSKVYGRMR LQPGECNMRY IMRNNPSQTE TQLKAPVDKR GSGR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-37	FAR1-related sequence 5